Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00559 ATGGTTTCAATGTCGCTCTGTCTTTCTTCTTCCTTTATTCCTTCTCTCATTCCCTATACCAAATTTCCCACAGCTGAAGATCCGATTTTTCGGGTCACCCGCTTCTCAGTTTCTGCTCCGTCAAAAACCAGTGTTTCTGCCTCTTCTACCCGAAAACCAGCTCCAGCAACCAAAACCAGAAACCCGAAAGATAAGGAATTTTCCCAAACACTGTTCTTTGAGTGTATGGAGGAGACACCCATCAAGAAGAAGAAGAAAAAGAAGGAGAAAAGGAAGAGTGAGAAAGTGTGGGTTCACACTCTCCCCGAAGTCTTATACTATCACATTCATAAGAAGAACTGGGCTATTACCCTTGAGTTGTTTGGCATGCTTAGAGGGCAACCCTATTACCAACCCAGAGAAGATACTTACATGAGACTCATTGTGTTGCTTGGAAAATCTGGCCAACCCCATCGTGCCAATGAGCTTTTTAGCTCTATACATGAAGATGGTTGTGAAAGTACTGAACTTTACACAGCCTTAATTGCAGCCTATTGTCGAAATAATCTTGTTGATGAGGCATTGTCGATTCTTGATGAGATGATGAACATCCCCAATTGCCAGCCTGATATCATAACTTACAGTACCTTGATGGAAGCTCTTGTGGATGCTTTGAAGTTTGAAATGGTTGAGTTGGTGTATGATAAAATGATTGAAAGATCTATCATGCCAAACACTCTCACCCAGAACCTCCTCCTTAGTTGTTATGGTAAGGCTGGGAAGTTTGATCAGATGGAGAAGATAGTGTCAAGTATGATGGAGAGTACTACCTGCAAGCCTGATGTTTGGACAATGAACGCGGTCATCAGTGTCTTTCGTGATGAGGGTCAGATTGATATGATGGAGAAATGGTATGAGATGTTTTGTAGTTTTGGGATACAACCACAAAGAAGCACTTTTAATATTTTAATGGGAGCTTATAGTAAAAAAAGAATGTATGATAAAATGTCATCAGTTATGCAGTGTATGCGTAAGGAAAATTGTCCGTGGACAACTCCAACTTACAACTTTGTGATTGAGGCGTTTGCAGATGTAGGTGATGCTGCAAACATGGAACATGCATATGATCAAATGGTTGCTGAGGGTTTGAAAGCAGATACCAAGACTTTTTGCTGCCTTATCAATGGCTATGCTAAGGCAGGAATCTTCTATAAAGTAATGAGCAGTGTTGTTTTGGCTGAGAAGCTTCAGATACATATGAATACTTCATTTTACAATGCAGTCATATCTGCCTGTGCCAAAGAGGATTCTTTGATTGAAATGGAAAGGTTTTTCAAGCGTATGAAAGAAAAAGAATGTCAACCAGATGACACTACATACTCTGTCATGATTGAAGCATACGGAAAAGCAAATATGAATGATAAAATATACTATTTGGAGCAAGAAAAACAGATGATGATATCTGATGAGAAAAAAATTGAATGA 1464 0.3955 MVSMSLCLSSSFIPSLIPYTKFPTAEDPIFRVTRFSVSAPSKTSVSASSTRKPAPATKTRNPKDKEFSQTLFFECMEETPIKKKKKKKEKRKSEKVWVHTLPEVLYYHIHKKNWAITLELFGMLRGQPYYQPREDTYMRLIVLLGKSGQPHRANELFSSIHEDGCESTELYTALIAAYCRNNLVDEALSILDEMMNIPNCQPDIITYSTLMEALVDALKFEMVELVYDKMIERSIMPNTLTQNLLLSCYGKAGKFDQMEKIVSSMMESTTCKPDVWTMNAVISVFRDEGQIDMMEKWYEMFCSFGIQPQRSTFNILMGAYSKKRMYDKMSSVMQCMRKENCPWTTPTYNFVIEAFADVGDAANMEHAYDQMVAEGLKADTKTFCCLINGYAKAGIFYKVMSSVVLAEKLQIHMNTSFYNAVISACAKEDSLIEMERFFKRMKEKECQPDDTTYSVMIEAYGKANMNDKIYYLEQEKQMMISDEKKIE 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00559 487 Gene3D Tetratricopeptide repeat domain 231 399 IPR011990 GO:0005515
Vimu10g00559 487 Pfam PPR repeat 136 165 IPR002885 -
Vimu10g00559 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Vimu10g00559 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 273 IPR002885 -
Vimu10g00559 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Vimu10g00559 487 PANTHER EXPRESSED PROTEIN 32 475 IPR044179 GO:0003729
Vimu10g00559 487 Pfam PPR repeat family 170 215 IPR002885 -
Vimu10g00559 487 Pfam PPR repeat family 414 460 IPR002885 -
Vimu10g00559 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 202 IPR002885 -
Vimu10g00559 487 MobiDBLite consensus disorder prediction 43 62 - -
Vimu10g00559 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Vimu10g00559 487 NCBIfam pentatricopeptide repeat 170 196 IPR002885 -
Vimu10g00559 487 NCBIfam pentatricopeptide repeat 312 344 IPR002885 -
Vimu10g00559 487 NCBIfam pentatricopeptide repeat 205 239 IPR002885 -
Vimu10g00559 487 NCBIfam pentatricopeptide repeat 418 449 IPR002885 -
Vimu10g00559 487 NCBIfam pentatricopeptide repeat 241 275 IPR002885 -
Vimu10g00559 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Vimu10g00559 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Vimu10g00559 487 Pfam Pentatricopeptide repeat domain 226 285 IPR002885 -
Vimu10g00559 487 Pfam Pentatricopeptide repeat domain 305 356 IPR002885 -
Vimu10g00559 487 Gene3D Tetratricopeptide repeat domain 74 230 IPR011990 GO:0005515
Vimu10g00559 487 Gene3D Tetratricopeptide repeat domain 400 479 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00559 Vimu-Chr10 4605489 4607749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00559 131 475 Glycosyltransferase AT1G05670 22.414 4.20e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00559 - - gmx:100776657 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00559 10 4605489 4607749 Vimu10g00559 10 4605489 4607749 ECH
Vimu7g01641 7 15260920 15263103 Vimu10g00559 10 4605489 4607749 PCT