Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01548 ATGGCTACCGATCGTTTGACCCGTGTTCACAGTCTCCGTGAGAGGCTTGATGAAACCCTGTCTGCCAACAGGAACGAAATTCTGGCCCTTCTGTCAAGGATCGAAGGCAAGGGCAAGGGGATTTTGCAACACCATCAGGTCATTGCCGAGTTTGAGGAAATCCCCGAGGAGAGCAGACAGAAGCTTACTGATGGTGCCTTTGGAGAAGTTTTGAGATCTACTCAGGAAGCCATAGTTTTGCCACCATGGGTTGCTCTGGCCGTTCGTCCAAGGCCTGGTGTGTGGGAGTACCTGAGAGTGAATGTGCACGCTCTAGTTGTTGAGGTGTTGCAACCTGCTGAGTACCTGCGCTTCAAGGAGGAACTTGTTGATGGAAGTTCTAATGGCAACTTTGTGCTTGAGTTGGACTTTGAACCCTTTACCGCATCCTTCCCCCGCCCAACTCTTAACAAGTCAATTGGAAATGGCGTGCAGTTCCTCAACCGTCACCTTTCTGCCAAACTCTTCCATGACAAGGAGAGCTTGCACCCGCTTTTGGAATTCCTCAGGCTTCACAGCGTCAAGGGAAAGACTTTGATGTTGAATGACAGAATTCAAAACCCGGATGCTCTTCAACATGTTCTGAGGAAAGCTGAGGAGTATCTGGGCACAGTGCCTCCTGAAACCCCCTACTCAGCATTTGAGCACAAGTTCCAGGAGATTGGTTTGGAGAGAGGGTGGGGTGACAACGCAGAGCGTGTACTCGAGTCAATTCAACTTCTCTTGGATCTTCTTGAGGCCCCTGATCCTTGCACCCTTGAGACTTTCCTTGGAAGAATCCCTATGGTTTTTAATGTTGTTATTCTTTCTCCCCATGGTTACTTTGCCCAAGATAATGTCTTGGGATACCCTGACACCGGTGGTCAGGTTGTTTACATCTTGGATCAAGTTCGTGCTTTGGAGAATGAAATGCTTCATCGCATTAAGCAACAAGGATTGGACATTGTTCCTCGTATTCTCATCATCACCCGTCTTCTACCAGATGCAGTAGGTACTACTTGCGGCCAACGTCTTGAGAAGGTGTTTGGAACTGAACACTCTCACATTCTACGAGTTCCCTTTAGAACTGAGAACGGAATTGTTCGCAAGTGGATCTCAAGATTCGAAGTCTGGCCCTACTTGGAAACTTACACCGAGGATGTTGCTCATGAGCTTGCAAAAGAGTTGCAAGGCAAGCCAGATCTGATCGTTGGAAACTACAGTGATGGAAACATTGTTGCCTCTTTGTTGGCACATAAATTAGGTGTCACTCAGTGTACCATTGCTCATGCACTTGAGAAGACCAAATATCCTGAATCCGACATTTACTGGAAAAAACTGGAAGAGAGATACCACTTCTCTTGCCAATTCACAGCCGATCTATTTGCCATGAACCACACAGATTTCATCATTACCAGTACATTCCAAGAGATTGCTGGAAGCAAGGACACTGTTGGACAGTATGAGTCTCACACAGCCTTCACCCTTCCTGGACTCTACCGTGTTGTGCACGGTATTGATGTCTTCGATCCAAAATTCAACATTGTCTCTCCCGGAGCTGATCAAACCATTTACTTCCCCCACACCGAAACTAGCCGCAGGTTGACCTCTTTCCACACCGAAATCGAAGAGCTTCTCTACAGTTCAGTCGAGAACGAAGAACACATATGTGTGCTGAAGGACCGCTCGAAGCCAATTATCTTCACCATGGCTAGGTTGGACCGTGTGAAGAACATCACAGGACTGGTGGAGTGGTACGGTAAGAACGCGAAGCTGAGGGAGTTGGTGAACCTCGTGGTCGTTGCTGGAGACAGGAGGAAGGAGTCGAAGGACTTGGAAGAGAAGGCGGAGATGAAGAAGATGTATAGCCTGATCGAGACGTACAAGTTGAACGGGCAATTCAGATGGATTTCATCTCAGATGAACCGTGTGAGGAATGGAGAGCTGTACCGTGTGATCGCCGACACCAAGGGTGCTTTTGTGCAGCCTGCAGTGTACGAGGCATTTGGTTTGACAGTGGTTGAGGCCATGACTTGTGGGTTGCCAACATTTGCAACATGCAATGGTGGACCTGCTGAGATCATCGTCCATGGAAAATCTGGGTTCCACATTGATCCTTACCACGGTGACCGTGCTGCTGACCTCCTTGTTGAGTTCTTTGAGAAGGTCAAGGTTGACCCATCTCACTGGGACAAGATCTCTCAAGCCGGTCTCCAACGTATTGAAGAGAAGTACACATGGCAAATTTACTCGCAGAGGCTTCTCACTCTCACCGGTGTGTATGGTTTCTGGAAGCATGTGTCTAACCTGGATCGCCGTGAGAGTCGGCGCTATCTTGAGATGTTCTATGCTCTCAAGTACCGCAAATTGGCTGAGTCTGTGCCCCTTGCTGTTGAGTAA 2418 0.4835 MATDRLTRVHSLRERLDETLSANRNEILALLSRIEGKGKGILQHHQVIAEFEEIPEESRQKLTDGAFGEVLRSTQEAIVLPPWVALAVRPRPGVWEYLRVNVHALVVEVLQPAEYLRFKEELVDGSSNGNFVLELDFEPFTASFPRPTLNKSIGNGVQFLNRHLSAKLFHDKESLHPLLEFLRLHSVKGKTLMLNDRIQNPDALQHVLRKAEEYLGTVPPETPYSAFEHKFQEIGLERGWGDNAERVLESIQLLLDLLEAPDPCTLETFLGRIPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLHRIKQQGLDIVPRILIITRLLPDAVGTTCGQRLEKVFGTEHSHILRVPFRTENGIVRKWISRFEVWPYLETYTEDVAHELAKELQGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKLEERYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADQTIYFPHTETSRRLTSFHTEIEELLYSSVENEEHICVLKDRSKPIIFTMARLDRVKNITGLVEWYGKNAKLRELVNLVVVAGDRRKESKDLEEKAEMKKMYSLIETYKLNGQFRWISSQMNRVRNGELYRVIADTKGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDPSHWDKISQAGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRRESRRYLEMFYALKYRKLAESVPLAVE 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01548 805 NCBIfam sucrose synthase 24 802 IPR012820 GO:0005985|GO:0016157
Vimu7g01548 805 PANTHER - 7 803 IPR012820 GO:0005985|GO:0016157
Vimu7g01548 805 Gene3D Glycogen Phosphorylase B; 280 796 - -
Vimu7g01548 805 FunFam Sucrose synthase 146 275 - -
Vimu7g01548 805 FunFam Sucrose synthase 280 558 - -
Vimu7g01548 805 Gene3D - 25 145 - -
Vimu7g01548 805 Gene3D Glycogen Phosphorylase B; 527 753 - -
Vimu7g01548 805 Gene3D - 146 275 - -
Vimu7g01548 805 Pfam Sucrose synthase 8 553 IPR000368 GO:0005985|GO:0016157
Vimu7g01548 805 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 295 763 - -
Vimu7g01548 805 Pfam Glycosyl transferases group 1 564 728 IPR001296 GO:0016757
Vimu7g01548 805 FunFam Sucrose synthase 11 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01548 Vimu-Chr7 14603697 14607564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01548 6 805 Glycosyltransferase AT3G43190 84.625 0.0 1422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01548 K00695 - gmx:547508 1585.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01548 7 14603697 14607564 Vimu7g01548 7 14603697 14607564 ECH
Vimu7g01548 7 14603697 14607564 Vimu10g00514 10 4088429 4094201 PCT