Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00514 ATGATGCTGAATGACAAAGTTCAGAACCTTAATTCTCTCCAACATGTTTTGAGAAAAGCAGAAGAGTATCTAACTTCTGTTGCTCCTGCAACGCCCTACTCAGAATTTGAAAGCAGATTCCGGGAGATTGGCTTGGAGAGGGGATGGGGTGACACCGCCGAGCGGGTCCTCGAGATGATCCAGCTTCTGTTGGATCTTCTGGAGGCACCTGATCCTTGCACCCTTGAGACATTCCTTGGAAGAGTCCCTATGGTCTTCAATGTTGTAATCCTTTCACCCCATGGTTACTTTGCCCAAGATAATGTCTTGGGATACCCTGACACTGGTGGGCAGGTTGTTTACATCCTGGATCAAGTTCGTGCCTTGGAGAATGAGATGCTCAACCGCATCAAGAAACAAGGCTTGGATATCACTCCTCGTATTCTCATTATCACTCGTCTTCTCCCTGATGCAGTAGGAACAACCTGTGGCCAACGTCTAGAGAGGGTATATGATACTGAATATTGTGACATTCTCCGAGTTCCTTTCAGAACAGAGAAGGGAATTGTTCGCAAATGGATCTCTAGATTCGAAGTCTGGCCATACCTAGAGACTTATGCTGAGGATGTTGCTGTTGAACTTGCTAAGGAATTGCAAGCTAAGCCAGATCTGATTGTTGGAAACTACAGTGATGGAAACATTGTTGCCTCTTTGTTAGCACATAAATTAGGAGTAACTCAGTGTACCATTGCTCATGCTCTAGAAAAGACCAAATACCCCGAGTCTGACATTTACTGGAAAAAATTCGAAGAGAAATATCACTTTTCATGCCAATTTACTGCTGATCTTTTTGCAATGAACCACACAGACTTTATCATCACCAGCACCTTCCAAGAGATTGCTGGGAGCAAGGATACTGTTGGACAGTACGAGAGTCACACTGCCTTCACCCTTCCTGGTCTTTACCGAGTTGTTCACGGTATTGATGTCTTTGATCCAAAGTTCAACATTGTCTCTCCAGGAGCTGATATGGGCATATACTTCCCATACACTGAAACTGAGCGTAGGTTAACAAATTTCCACCCTGAGATTGAAGAGCTTCTTTACAGCTCAGTGGAGAACGAGGAACACATATGTGTATTGAAGGATCGCAACAAGCCAATCATCTTCACCATGGCAAGACTTGACCGTGTGAAGAACATCACAGGACTTGTTGAGTGGTACGGGAAGAACGCGCGGCTCCGGGAGTTGGTGAACCTAGTTGTTGTTGCTGGAGACAGGAGGAAGGAGTCGAAGGACTTGGAAGAGAAGGCTGAGATGAAGAAGATGTATGGCCTCATTGAGACCTACAAGTTGAATGGCCAATTCAGATGGATCTCCTCTCAGATGAACAGAGTTAGAAATGGAGAGCTCTACCGTGTAATATGTGACACAAAGGGTGCTTTTGTGCAGCCTGCGGTATATGAAGCCTTTGGGTTGACAGTGGTTGAAGCCATGACTTGTGGATTGCCAACATTTGCCACATTCAATGGTGGTCCTGCTGAGATCATCGTCCATGGAAAATCTGGATACCACATTGACCCCTACCATGGTGACCGTGCTGCTGAGATCCTTGTTGACTTCTTTGAGAAGAGCAAAGCAGACCCATCTCACTGGGACAAAATCTCCCAGGGAGGACTCAAGCGTATTCAAGAGAAGTACACATGGCAGATTTACTCTGACAGGCTCTTGACACTGACGGGTGTCTATGGCTTCTGGAAGCATGTCACCAACCTTGAACGCCGTGAGAGCAAACGTTACCTCGAGATGTTCTATGCTCTCAAGTACCGCAAATTGGCTGAGTCTGTTCCCCTTGCCATTGAAGAGTAA 1848 0.46 MMLNDKVQNLNSLQHVLRKAEEYLTSVAPATPYSEFESRFREIGLERGWGDTAERVLEMIQLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLNRIKKQGLDITPRILIITRLLPDAVGTTCGQRLERVYDTEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYAEDVAVELAKELQAKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMGIYFPYTETERRLTNFHPEIEELLYSSVENEEHICVLKDRNKPIIFTMARLDRVKNITGLVEWYGKNARLRELVNLVVVAGDRRKESKDLEEKAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMTCGLPTFATFNGGPAEIIVHGKSGYHIDPYHGDRAAEILVDFFEKSKADPSHWDKISQGGLKRIQEKYTWQIYSDRLLTLTGVYGFWKHVTNLERRESKRYLEMFYALKYRKLAESVPLAIEE 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00514 615 Gene3D - 1 84 - -
Vimu10g00514 615 NCBIfam sucrose synthase 1 611 IPR012820 GO:0005985|GO:0016157
Vimu10g00514 615 Gene3D Glycogen Phosphorylase B; 336 562 - -
Vimu10g00514 615 FunFam Sucrose synthase 89 352 - -
Vimu10g00514 615 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 104 572 - -
Vimu10g00514 615 Gene3D Glycogen Phosphorylase B; 89 605 - -
Vimu10g00514 615 Pfam Glycosyl transferases group 1 373 547 IPR001296 GO:0016757
Vimu10g00514 615 PANTHER - 1 614 IPR012820 GO:0005985|GO:0016157
Vimu10g00514 615 Pfam Sucrose synthase 1 362 IPR000368 GO:0005985|GO:0016157
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00514 Vimu-Chr10 4088429 4094201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00514 1 615 Glycosyltransferase AT3G43190 86.667 0.0 1134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00514 K00695 - gmx:100819730 1202.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00514 10 4088429 4094201 Vimu10g00514 10 4088429 4094201 ECH
Vimu7g01548 7 14603697 14607564 Vimu10g00514 10 4088429 4094201 PCT