Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01526 ATGAATATTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGAGTATCCAATATCACGGTGGAGAATGTTGTTGTATGGGATTCTAGACGTGGTGTGAGGATCAAGACCGCCCCTGGACGAGGAGGATATGTGCGCCAAATAACTTATCGGAATCTGACATTTGAGAATGTCCGTGTTGGAATTGTGATGAAGACAGATTACAATGAACACCCAGATGATGGGTATGAACCCACGGCACTCCCAATTCTGACAGACATAAGCTTTACCACTATCCATGGCCATGGGGTTCGCGTGCCAGTACGTATACACGGCAGTGAAGAAATTCCTGTGAAAAATGTGAGTTTTCAAGACATGTCAGTTGGTCTAACCTACAAGAAGAAACATATCTTTCAGTGTGCCTTTGTTGAAGGCCGTGTAATAGGGACCATCTTTCCTGCTCCCTGTGAGAACCTTGATCGGTACAATGAGCATGGACATCTGTTTAAGCGTTCTTCGTCTCAGAATGTCACAGATATAGATTATGATTTTTGA 534 0.4419 MNIAGISIGSEMSGGVSNITVENVVVWDSRRGVRIKTAPGRGGYVRQITYRNLTFENVRVGIVMKTDYNEHPDDGYEPTALPILTDISFTTIHGHGVRVPVRIHGSEEIPVKNVSFQDMSVGLTYKKKHIFQCAFVEGRVIGTIFPAPCENLDRYNEHGHLFKRSSSQNVTDIDYDF 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01526 177 SMART pbh1 16 37 IPR006626 -
Vimu7g01526 177 SMART pbh1 45 66 IPR006626 -
Vimu7g01526 177 SUPERFAMILY Pectin lyase-like 4 151 IPR011050 -
Vimu7g01526 177 Gene3D - 2 171 IPR012334 -
Vimu7g01526 177 PANTHER PECTIN LYASE-RELATED 3 162 - -
Vimu7g01526 177 Pfam Glycosyl hydrolases family 28 5 136 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01526 Vimu-Chr7 14383771 14385446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01526 1 176 Glycoside Hydrolase AT3G42950 76.136 4.19e-97 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01526 - - gmx:100818529 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01526 7 14383771 14385446 Vimu7g01526 7 14383771 14385446 ECH
Vimu7g01526 7 14383771 14385446 Vimu10g00487 10 3708844 3709407 PCT