Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00487 ATGTTGTTGCATGTAATTCTTTGTGTGAAATGCAACAGTGCTGGGATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAACGTGCTGGTGGAGAACATTCTGGTATGGGAATCAAGACGTGCCATGAGAATCAAGACAGCACCAGGAAGAGGTGGCTACGTGCGCCAAATAACTTACAGGAACCTAGTTTTCAAAAACGTGCGTGTTGGAATTGTGATAAAGACAGATTACAATGAACACCCTGGTGCTGGATACGATCCAAAAGCACTTCCAATACTGAGAGACATAAGGTTCATCAATATCCGTGGCCAAGGAGTTCGTGTGCCAGTTCGAATTCAAGGCAGTGAACAGATTCCAATAAGAAATGTGACATTCCAGAACATGAAGGTTGGCACAACCTACAAGAAGAGGCATATCTTCCAGTGTGCCTTTGTCCAAGGTCAGGTAATAGGGACCATCTCTCCCGTTCCCTGTGACAGCTTTGATCGGTACGATGAGCAAGGGAAGCTTGTTAAGCATGCTGCTTCGCAGAATGTCACAGACATAGATTATGAAATTTGA 564 0.4504 MLLHVILCVKCNSAGISIGSEMSGGVSNVLVENILVWESRRAMRIKTAPGRGGYVRQITYRNLVFKNVRVGIVIKTDYNEHPGAGYDPKALPILRDIRFINIRGQGVRVPVRIQGSEQIPIRNVTFQNMKVGTTYKKRHIFQCAFVQGQVIGTISPVPCDSFDRYDEQGKLVKHAASQNVTDIDYEI 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00487 187 Pfam Glycosyl hydrolases family 28 14 145 IPR000743 GO:0004650|GO:0005975
Vimu10g00487 187 PANTHER PECTIN LYASE-RELATED 8 175 - -
Vimu10g00487 187 SUPERFAMILY Pectin lyase-like 11 160 IPR011050 -
Vimu10g00487 187 Gene3D - 4 182 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00487 Vimu-Chr10 3708844 3709407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00487 13 187 Glycoside Hydrolase AT3G42950 72.000 6.17e-92 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00487 - - gmx:100800910 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00487 10 3708844 3709407 Vimu10g00487 10 3708844 3709407 ECH
Vimu7g01526 7 14383771 14385446 Vimu10g00487 10 3708844 3709407 PCT