Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01443 TTGACGCTATTTTGCCGAATAATCAGTTCTTGCTTTCATTTGCAGAGATTTGAGCTGGGATTACTTGGCACTTCTCAGATTTTGAGTTTTTCATCTAAAGGTAGAAGGCGCTCCAAATCTGATGGAAGTGACTCTGGTGAAGAAAACATGTCCAAGAAAGAGTTGGCACTTCAACAAGCTCTTGATCAAATCACTTCTGCATTTGGAAAGGGATCCATCATGTGGCTTGGTCGCTCTGTCTCACCAAAAAATGTGCCTGTTGTGTCTACAGGTTCTTTTGCTCTGGATATGGCACTAGGAATTGGTGGTCTTCCGAAGGGACGTGTTGTGGAAATATATGGGCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTGATTGCAGAAGCACAAAAGCAAGGAGGTTATTGTGTCTTTGTTGATGCTGAGCACGCCCTTGACAAGAGACTTGCAGAGTCTATTGGGGTGAATACAGAAAACTTGCTTCTCTCCCAACCTGATTGTGGTGAACAAGCTCTCAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCACTTGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCACTTCGAAAATTGAGCCATGCCTTATCACTTTCTCAAAGTATATTAATTTTTATAAATCAGGTATCAGCTAAATTCTTATTAGCTATGTTGTCTGTTGTCAATTTGTTTTTGATAGGTAAACAAGAGTTTTCATTGCTAAAGGTGAGGTCAAAGATTTCAACCTTTGGGGGATTTAGTGGACCTACTGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCTGTGCGTCTAAATATCAAGAGAACAGGGTTTGTCAAGAAGGGTGAAGAGATTTTAGGAAGTCGGGTTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCTGAGTTTGAGCTTGAATTTGGCAAGGGGATATGTAGAGAAACAGAGGTTATAGATCTAAGTGTACAACACAGACTAATCTTAAAGGCTGGTGCAATGTATTACTATAACGAACAGAATTTCCGTGGTAAGGATGCCCTGAAGAATTTCCTAGCTGAGAATTGTAGCGCATTAGAAGAACTTGAAACTAAGCTCAGAGAAAAGGTTCTTAATGTTGAAACAGAACAGACACAAGAATCAGATGTTATTAATGGAGATGTTACCGAAGAAATTGCCTCAGTTGATTCTACTGTTGAAGAAACAGCTGTTGTAGAAGCATGA 1326 0.4065 MTLFCRIISSCFHLQRFELGLLGTSQILSFSSKGRRRSKSDGSDSGEENMSKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDMALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKRLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHALSLSQSILIFINQVSAKFLLAMLSVVNLFLIGKQEFSLLKVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRTGFVKKGEEILGSRVLVKVVKNKLAPPFKTAEFELEFGKGICRETEVIDLSVQHRLILKAGAMYYYNEQNFRGKDALKNFLAENCSALEELETKLREKVLNVETEQTQESDVINGDVTEEIASVDSTVEETAVVEA 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01443 441 ProSitePatterns recA signature. 292 300 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vimu7g01443 441 MobiDBLite consensus disorder prediction 33 52 - -
Vimu7g01443 441 MobiDBLite consensus disorder prediction 34 51 - -
Vimu7g01443 441 ProSiteProfiles RecA family profile 1. 84 243 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vimu7g01443 441 Hamap Protein RecA [recA]. 53 407 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu7g01443 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 346 IPR027417 -
Vimu7g01443 441 PRINTS RecA protein signature 375 392 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu7g01443 441 PRINTS RecA protein signature 176 205 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu7g01443 441 PRINTS RecA protein signature 142 171 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu7g01443 441 PRINTS RecA protein signature 214 243 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu7g01443 441 PRINTS RecA protein signature 289 317 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu7g01443 441 PRINTS RecA protein signature 322 351 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu7g01443 441 Gene3D - 83 260 IPR027417 -
Vimu7g01443 441 Gene3D - 261 413 IPR027417 -
Vimu7g01443 441 Pfam recA bacterial DNA recombination protein 269 346 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu7g01443 441 Pfam recA bacterial DNA recombination protein 56 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu7g01443 441 CDD RecA 84 348 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu7g01443 441 ProSiteProfiles RecA family profile 2. 278 351 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vimu7g01443 441 PANTHER RECA 30 415 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu7g01443 441 Coils Coil 393 413 - -
Vimu7g01443 441 SMART AAA_5 106 262 IPR003593 GO:0016887
Vimu7g01443 441 SUPERFAMILY RecA protein, C-terminal domain 349 403 IPR023400 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01443 Vimu-Chr7 13732238 13738847 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01443 K03553 - gmx:100781271 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01443 7 13732238 13738847 Vimu7g01443 7 13732238 13738847 ECH
Vimu7g01443 7 13732238 13738847 Vimu10g00406 10 3074129 3079366 PCT