Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00406 ATGGCGTGGCTGCTTCGTACCGCTAATTCTTCCCTCCTTAAACGTTCTTTCTTCCATTCCGACCTTCTGACGCGCTTTTGCTTCAAACCAGGACTGTTGGGCACGTCTCAAGTGTTGAGCTTTTCAACTCGAGCAAATATAGAGAAGTTGATTGCATTTTTAATTTTTTATGCACTTGAAGGTAAAAGGCGGTCTAAATCGGATGGAAGTGACTCAGGTGAAGAGAGCATGTCTAAGAAAGACGTGGCCTTACAGCAAGCTATTGATCAGATCACTTCCGCATATGGAAAGGGATCTATCATGTGGCTTGGTCGTTCTGTGGCACCTAAAAATATTCCTGTGGTGTCTACTGGTTCATTTGCTCTTGATATAGCACTTGGGGTTGGAGGTCTTCCAAAGGGGCGTGTTGTGGAAATATTTGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATGTGATTGCAGAAGCACAAAAGCTAGGAGGATACTGTGCATTTGTTGATGCTGAGCATGCACTTGATAAGACACTTGCAGATTCAATTGGTGTAAATACTAAGAACTTGCTTCTTTCACAACCTGATTGTGGTGAACAAGCACTTGGCCTTGTGGATACCTTAATACGGAGTGGTTCGGTTGATGTAATTGTTGTTGATAGTGTGGCTGCTCTTGTGCCTAAAGGTGAACTCGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCTCTTCGGAAATTGTGCCACTCTTTGTCTCTTTCCCAGTGTATATTGATTTTTATAAACCAGGTATCAGCTACAGTCGCATTGCATTGGGCTTTGCTTTCTAATTTTTGGTTGAGGTTGGGATTGGTTAGTCTTACAGTCAATGTGCTTTTAGGTCATTACTACGAGTTTGCTGTTGTGAGGTCAAAGATTTCTACTTTTGGAGGATTTGGTGGTCCCACTGAAGTTACATGTGGTGGTAATGCACTGAAGTTCTATGCTTCTGTGCGGCTAAATATCAAAAGAATTGGGTTTGTAAAGAAGGGTGAAGAGACTCTGGGAAGCCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCCCCTCCATTTAAAACTGCACAGTTTGAGCTTGAGTTTGGCAAGGGTATAAGTAGAGAAGCAGAGGTTATAGAGTTGAGCATAAAATACAAACTCATAAGGAAGAGTGGTTCCTTTTATGAATACAATGGCCAGAATTTCCATGGCAAGGATGCTCTAAAGAGGTTTCTGGTGGACAGCGACAGTGTACAAGAATTAGCAACAAAGCTCAGGGAGAAGATTCTTAATACGGCCCCGGAAGTTGACCCGGAGGAGCAGGTGATGATCGAAGACGTTATGGAAGAAATGGTATCTCTTGATTCTACCGATGAAACTGCTTCTGATGCTGCTGCTGTTGCAGAAGCATAA 1449 0.4348 MAWLLRTANSSLLKRSFFHSDLLTRFCFKPGLLGTSQVLSFSTRANIEKLIAFLIFYALEGKRRSKSDGSDSGEESMSKKDVALQQAIDQITSAYGKGSIMWLGRSVAPKNIPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKLGGYCAFVDAEHALDKTLADSIGVNTKNLLLSQPDCGEQALGLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVSATVALHWALLSNFWLRLGLVSLTVNVLLGHYYEFAVVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEETLGSQVLVKVVKNKHAPPFKTAQFELEFGKGISREAEVIELSIKYKLIRKSGSFYEYNGQNFHGKDALKRFLVDSDSVQELATKLREKILNTAPEVDPEEQVMIEDVMEEMVSLDSTDETASDAAAVAEA 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00406 482 ProSiteProfiles RecA family profile 2. 318 389 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vimu10g00406 482 SUPERFAMILY RecA protein, C-terminal domain 385 439 IPR023400 -
Vimu10g00406 482 Hamap Protein RecA [recA]. 80 445 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu10g00406 482 Pfam recA bacterial DNA recombination protein 308 385 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu10g00406 482 Pfam recA bacterial DNA recombination protein 83 275 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu10g00406 482 ProSiteProfiles RecA family profile 1. 111 270 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vimu10g00406 482 ProSitePatterns recA signature. 330 338 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vimu10g00406 482 PANTHER RECA 60 451 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu10g00406 482 PRINTS RecA protein signature 203 232 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu10g00406 482 PRINTS RecA protein signature 241 270 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu10g00406 482 PRINTS RecA protein signature 360 389 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu10g00406 482 PRINTS RecA protein signature 169 198 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu10g00406 482 PRINTS RecA protein signature 327 355 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu10g00406 482 PRINTS RecA protein signature 413 430 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu10g00406 482 SMART AAA_5 133 290 IPR003593 GO:0016887
Vimu10g00406 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 384 IPR027417 -
Vimu10g00406 482 CDD RecA 111 386 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu10g00406 482 Gene3D - 110 277 IPR027417 -
Vimu10g00406 482 Gene3D - 305 445 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00406 Vimu-Chr10 3074129 3079366 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00406 K03553 - gmx:100798983 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00406 10 3074129 3079366 Vimu10g00406 10 3074129 3079366 ECH
Vimu7g01443 7 13732238 13738847 Vimu10g00406 10 3074129 3079366 PCT