Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01425 ACACTGACGGGTTCACGGGTTCTTATGGAGAATTTACCAAAGGGTTTTTTTTATACCCTGCTGTTATTTTTGTGGGTCTGTGTAGTCACAGCCTCTGTGACTTATGATCACAAAGCCATTCTTGTTAATGGCCAGAGAAGAATTTTGATCTCAGGCTCCATCCACTACCCAAGAAGCACGCCTGAGATGTGGCCAGACCTTATTCAAAAGGCCAAAGATGGAGGCTTAGATGTCATTCAAACGTATGTGTTTTGGAATGGACACGAACCTTCTCCTGGAAAGTATTATTTCGAGGATAGATACGACCTGGTTAAGTTCATCAAGGTGGTGCAGCAGGCTGGTCTCTATCTTCATCTCCGTATTGGTCCCTTCGTATGTGCTGAGTGGAACTTTGGGGGCTTTCCTGTTTGGCTCAAGTATGTTCCGGGTATTGCTTTCAGAACAGACAACGAACCTTTTAAGGCGGCAATGCGAAATTTTACTGAGAAGATTGTGAACATGATGAAGGCGGAGAAATTGTTCCAGACTCAGGGTGGTCCTATAATTATGTCACAGGCAAGGAAGTGGGATTTGAATAAGATATTTATTCTTAGGATTGCTTTCGAGTTTCAACTTTGCATTTTGTCGTGTTATTTTTTTATGACTGAAATAGAAAACGAATTTGGACCAGTGGAGTGGGAAATTGGTGCTCCTGGAAAAGCTTATGCCCAATGGGCTGCTCAAATGGCTGTGGGTTTAGATACTGGTGTCCCCTGGATTATGTGCAAGCAAGAAGATGCTCCGGATCCTATTATTAACACCTGCAATGGATACTACTGTGAAAACTTCACTCCTAACAAGGAGTACAAACCCAAAATGTGGACAGAGAACTGGAGTGGCTGGTACACTGAGTTTGGTGGCGCGGTTCCTCGTAGACCTGCAGAAGACATGGCCTTCTCAGTTGCAAGATTCGTACAGAATGGCGGTTCATTTGTTAATTACTACATGTTCCATGGAGGAACTAACTTTGATCGGACATCAGGTGGCCCCTTTATTGCCACCAGCTATGACTATGATGGTCTCCTTGATGAATACGGACTTTTAAATGAGCCAAAATGGGGGCATTTGAGGGATTTGCATAAAGCAATAAAGCTGTGTGAGCCAGCTTTAGTGTCTGTAGATCCCACAGTGACATGGCCTGGTCAAAACCTTGAGGTACATGTGTTCAAGACTTCTGGTACTTGTGCTGCATTCCTAGGAAACTATGACACCAAATCTTCCGCTACAGTTTCATTTGGAAATGGAAAATATGACCTACCACCTTGGTCTATCAGCATCCTTCCTGATTGCAAAACTGAAGTTTTCAACACTGCAAGAGTTGGTGCTCAAAGCTCTCTGCAGAAGATGACTGCTGTGAACACTGCATTTGATTGGCAGTCATACAATGAAGAGCCAGCATCGTCCAGTGAAGATGATCCCTTAACAGCAGATGCACTCTGGGAGCAGGTTAATATCACCCGAGATTCTACAGATTATTTGTGGTATATGACAGATGTCAATATTGATACAAATGAAGGTTTTATAAAGAGAGGACAATCTCCTGTTCTTACCGTGATGTCAGCTGGCCATGCTTTGCATGTTTTCATCAATGGTCAACTTTCAGGTACTGTGTATGGGGGATTGGAGTTCCCTAAATTAACATTTAGTGACAGAGTGAAGCTGAGGATTGGGAATAATAAGCTATCTTTACTAAGTATTGCCGTCGGTCTCCCGAATGTCGGGATTCACTTTGAGACATGGAATGCTGGGGTGTTAGGCCCAGTCACACTAAATGGTCTAAATGAGGGGACTAGAGACTTGTCTAAACAGAAATGGTCTTACAAGATTGGTCTCAAGGGAGAAGCCTTAAACCTTAACACTGTAAGTGGGAGTAGCTCAGTTGAATGGGTAGAAGGATCATTATTGGCTAAAAAGCAGCCTTTGACATGGTACAAGACAACTTTTAGCACACCAGCAGGCAATGATCCATTGGCTCTGGACATGATTAGCATGGGAAAGGGCCAAGTATGGATAAATGGTAAAAGCATTGGACGACATTGGCCTGGATATATAGCACGCGGTGGTTGTGGGGAATGTTCCTACGCTGGAACTTACACTGAGAAAAAATGCCAGACAAACTGTGGAGAGCCCTCCCAGAGATGGTACCATATTCCTCGGTCGTGGCTGAACCCAAGTGAGAACTACCTGGTTGTGTTTGAAGAATGGGGAGGAGACCCTAGTGGAATTTCTTTGCTGAAAAGAACAACAGCAAGTGTTTGTTCTGATATATATGAAGGGCAACCAACTCTAAAGAACAGACAGATGCTGGCCAGTGGCAAAATTAATAGACCCAAGGCTCACTTGTGGTGTCCACCTGGGCTAAAGATTTCCCAGATTAAATTTGCTAGTTATGGATTGCCTCTGGGAACTTGTGGAAACTATAGAGAGGGAAGCTGCCATGCTCACAGATCATATGATGCTCCTGAAAAGAACTGCATTGGCAAGCAATCTTGCTCTGTGACTGTAGCTGCTAAAGTTTTCGGGGGAGACCCATGTCCGGGAACTGCAAAGAAGTTATCACTTGAGGCACTATGCAGCTAG 2619 0.4402 TLTGSRVLMENLPKGFFYTLLLFLWVCVVTASVTYDHKAILVNGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVKFIKVVQQAGLYLHLRIGPFVCAEWNFGGFPVWLKYVPGIAFRTDNEPFKAAMRNFTEKIVNMMKAEKLFQTQGGPIIMSQARKWDLNKIFILRIAFEFQLCILSCYFFMTEIENEFGPVEWEIGAPGKAYAQWAAQMAVGLDTGVPWIMCKQEDAPDPIINTCNGYYCENFTPNKEYKPKMWTENWSGWYTEFGGAVPRRPAEDMAFSVARFVQNGGSFVNYYMFHGGTNFDRTSGGPFIATSYDYDGLLDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVTWPGQNLEVHVFKTSGTCAAFLGNYDTKSSATVSFGNGKYDLPPWSISILPDCKTEVFNTARVGAQSSLQKMTAVNTAFDWQSYNEEPASSSEDDPLTADALWEQVNITRDSTDYLWYMTDVNIDTNEGFIKRGQSPVLTVMSAGHALHVFINGQLSGTVYGGLEFPKLTFSDRVKLRIGNNKLSLLSIAVGLPNVGIHFETWNAGVLGPVTLNGLNEGTRDLSKQKWSYKIGLKGEALNLNTVSGSSSVEWVEGSLLAKKQPLTWYKTTFSTPAGNDPLALDMISMGKGQVWINGKSIGRHWPGYIARGGCGECSYAGTYTEKKCQTNCGEPSQRWYHIPRSWLNPSENYLVVFEEWGGDPSGISLLKRTTASVCSDIYEGQPTLKNRQMLASGKINRPKAHLWCPPGLKISQIKFASYGLPLGTCGNYREGSCHAHRSYDAPEKNCIGKQSCSVTVAAKVFGGDPCPGTAKKLSLEALCS 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01425 872 PRINTS Glycosyl hydrolase family 35 signature 176 191 IPR001944 GO:0004553|GO:0005975
Vimu7g01425 872 PRINTS Glycosyl hydrolase family 35 signature 64 82 IPR001944 GO:0004553|GO:0005975
Vimu7g01425 872 PRINTS Glycosyl hydrolase family 35 signature 323 338 IPR001944 GO:0004553|GO:0005975
Vimu7g01425 872 PRINTS Glycosyl hydrolase family 35 signature 286 301 IPR001944 GO:0004553|GO:0005975
Vimu7g01425 872 PRINTS Glycosyl hydrolase family 35 signature 679 695 IPR001944 GO:0004553|GO:0005975
Vimu7g01425 872 PRINTS Glycosyl hydrolase family 35 signature 652 666 IPR001944 GO:0004553|GO:0005975
Vimu7g01425 872 PRINTS Glycosyl hydrolase family 35 signature 343 359 IPR001944 GO:0004553|GO:0005975
Vimu7g01425 872 PRINTS Glycosyl hydrolase family 35 signature 119 138 IPR001944 GO:0004553|GO:0005975
Vimu7g01425 872 PRINTS Glycosyl hydrolase family 35 signature 43 60 IPR001944 GO:0004553|GO:0005975
Vimu7g01425 872 FunFam Beta-galactosidase 328 455 - -
Vimu7g01425 872 SUPERFAMILY (Trans)glycosidases 19 354 IPR017853 -
Vimu7g01425 872 PANTHER BETA-GALACTOSIDASE RELATED 27 776 IPR001944 GO:0004553|GO:0005975
Vimu7g01425 872 Gene3D Glycosidases 26 379 - -
Vimu7g01425 872 FunFam Beta-galactosidase 783 872 - -
Vimu7g01425 872 SUPERFAMILY Galactose-binding domain-like 617 775 IPR008979 -
Vimu7g01425 872 Gene3D - 470 615 - -
Vimu7g01425 872 ProSiteProfiles SUEL-type lectin domain profile. 786 872 IPR000922 GO:0030246
Vimu7g01425 872 CDD Gal_Rha_Lectin_BGal 789 871 - -
Vimu7g01425 872 Gene3D - 779 872 IPR043159 -
Vimu7g01425 872 Gene3D - 625 766 - -
Vimu7g01425 872 Pfam Glycosyl hydrolases family 35 40 185 IPR031330 -
Vimu7g01425 872 Pfam Glycosyl hydrolases family 35 214 375 IPR031330 -
Vimu7g01425 872 FunFam Beta-galactosidase 625 766 - -
Vimu7g01425 872 Pfam Galactose binding lectin domain 794 871 IPR000922 GO:0030246
Vimu7g01425 872 Pfam Beta-sandwich domain in beta galactosidase 383 453 IPR041392 -
Vimu7g01425 872 SUPERFAMILY Galactose-binding domain-like 437 607 IPR008979 -
Vimu7g01425 872 FunFam Beta-galactosidase 480 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01425 Vimu-Chr7 13568111 13573878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01425 20 872 Glycoside Hydrolase AT3G13750 68.685 0.0 1231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01425 - - gmx:106795462 1580.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01425 7 13568111 13573878 Vimu7g01425 7 13568111 13573878 ECH
Vimu7g01425 7 13568111 13573878 Vimu10g00394 10 2936106 2941774 PCT