Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00394 ATGGGGAAGGGAGAGTTTCATGGAGGGGTGTTGATGCTGTTGTTTTTGTGGGTTTGTGGTGTCACAGCCTCTGTCACTTACGACCACAAAGCCATTGTGATTGATGGAAAGAGGAGAATTTTGATCTCTGGCTCCATTCACTACCCAAGAAGCACTCCTCAAATGTGGCCAGACCTCATTCAGAAGGCCAAAGATGGAGGCCTTGATGTCATTCAGACCTATGTTTTCTGGAATGGTCATGAACCTTCTCCGGGAAAATACTATTTCGAAGATAGGTATGACTTGGTTAGGTTCGTGAAGCTAGCGCAGCAAGCAGGCCTCTATGTTCATCTCCGCATTGGTCCCTACATATGTGCTGAATGGAACTTTGGGGGATTTCCTGTCTGGCTCAAGTATGTTCCTGGAATTGCTTTCAGAACAGACAACGAACCGTTCAAGGCTGCAATGCAAAAATTCACAGCGAAGATTGTTAGCTTGATGAAAGAAGAGAGGTTGTTTCAATCCCAGGGTGGTCCAATAATTTTGTCACAGATTGAAAACGAGTATGGTCCTGTGGAATGGGAAATTGGTGCTCCTGGAAAATCTTATACGAAGTGGGCTGCTCAAATGGCTGTTGGTCTAGACACTGGTGTTCCATGGGTTATGTGCAAGCAAGAAGATGCTCCTGATCCTGTTATTGACACCTGCAATGGGTTCTACTGTGAAAACTTCAAACCCAACAAGAACACCAAACCCAAAATGTGGACCGAGAATTGGACTGGCTGGTACACTGATTTTGGTGGTGCAGTCCCTATTAGACCAGCAGAAGACTTGGCATTTTCAGTTGCAAGATTCATACAAAATGGTGGTTCATTCGTTAATTACTATATGTACCATGGTGGAACTAACTTTGGTCGGACATCTGGTGGTCTCTTCATTGCCACTAGCTATGACTATGACGCACCCCTTGATGAATACGGACTTCAAAATGAACCAAAATGGGGGCATTTGAGAGCTTTGCATAAAGCAATAAAACAAAGTGAGCCTGCTTTGGTGTCTACAGATCCTAAGGTGACATCGCTTGGATATAACCTTGAGGCACATGTGTTCTCAACCCCTGGTGCCTGTGCGGCATTCATTGCAAATTATGACACCAAATCCTCTGCAAAAGCTACGTTTGGAAGTGGACAATATGATCTACCACCTTGGTCTATCAGTATTCTTCCTGACTGCAAAACTGTTGTTTACAACACCGCAAGGGTTGGTAACGGCTGGGTGAAAAAGATGACTCCTGTAAACAGTGGATTTGCTTGGCAGTCATACAATGAAGAACCTGCCTCATCAAGTCAAGATGATTCCATTGCAGCAGAGGCACTCTGGGAACAGGTCAATGTGACCCGGGATTCTTCAGATTATTTGTGTGTCTACATTAATGGTAATGAAGGTTTTCTAAAGAATGGTCGATCTCCTGTTCTCACTGTAATGTCAGCAGGCCATCTGCTACATGTTTTCATTAATGGACAACTTTCAGGAACTGTGTATGGGGGATTGGGGAATCCTAAATTAACATTTAGTGACAATGTGAACTTGAGAGTTGGCAATAACAAGCTTTCTTTACTAAGTGTTGCCGTTGGTCTCCCGAATGTTGGCGTGCACTTTGAAACATGGAATGCAGGGGTGTTAGGCCCAGTCACTCTGAAGGGTCTAAATGAAGGAACACGAGACTTGTCCCGACAGAAATGGTCTTACAAGGTAGGACTGAAAGGTGAAGCCTTGAACCTTCACACTGAAAGTGGGAGTAGCTCTGTTGAATGGATACAAGGATCATTAGTGGCTAAAAAACAACCTTTGACATGGTATAAGGCAACTTTTAGTGCACCAGCTGGCAATGACCCATTGGCTCTAGATTTGGGTAGCATGGGAAAGGGTGAAGTATGGGTCAACGGTCGCAGCATTGGTCGCCATTGGCCTGGATATATTGCACATGGCAGTTGTAATGCTTGCAACTATGCTGGATATTATACTGATCAAAAATGCAGGACAAATTGTGGAAAACCATCTCAGAGATGGTATCATGTTCCTCGTTCATGGCTGAACTCAGGTGGTAACTCCTTGGTCGTGTTTGAAGAATGGGGAGGTGATCCTAATGGAATTGCTTTGGCTATTGTGCTGAATATTGCTCCATTGTACCAGAGGGCTTGTGTCAATGAAGATTGA 2196 0.4435 MGKGEFHGGVLMLLFLWVCGVTASVTYDHKAIVIDGKRRILISGSIHYPRSTPQMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVRFVKLAQQAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIAFRTDNEPFKAAMQKFTAKIVSLMKEERLFQSQGGPIILSQIENEYGPVEWEIGAPGKSYTKWAAQMAVGLDTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKNTKPKMWTENWTGWYTDFGGAVPIRPAEDLAFSVARFIQNGGSFVNYYMYHGGTNFGRTSGGLFIATSYDYDAPLDEYGLQNEPKWGHLRALHKAIKQSEPALVSTDPKVTSLGYNLEAHVFSTPGACAAFIANYDTKSSAKATFGSGQYDLPPWSISILPDCKTVVYNTARVGNGWVKKMTPVNSGFAWQSYNEEPASSSQDDSIAAEALWEQVNVTRDSSDYLCVYINGNEGFLKNGRSPVLTVMSAGHLLHVFINGQLSGTVYGGLGNPKLTFSDNVNLRVGNNKLSLLSVAVGLPNVGVHFETWNAGVLGPVTLKGLNEGTRDLSRQKWSYKVGLKGEALNLHTESGSSSVEWIQGSLVAKKQPLTWYKATFSAPAGNDPLALDLGSMGKGEVWVNGRSIGRHWPGYIAHGSCNACNYAGYYTDQKCRTNCGKPSQRWYHVPRSWLNSGGNSLVVFEEWGGDPNGIALAIVLNIAPLYQRACVNED 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00394 731 FunFam Beta-galactosidase 581 719 - -
Vimu10g00394 731 Pfam Glycosyl hydrolases family 35 32 336 IPR031330 -
Vimu10g00394 731 PRINTS Glycosyl hydrolase family 35 signature 111 130 IPR001944 GO:0004553|GO:0005975
Vimu10g00394 731 PRINTS Glycosyl hydrolase family 35 signature 247 262 IPR001944 GO:0004553|GO:0005975
Vimu10g00394 731 PRINTS Glycosyl hydrolase family 35 signature 304 320 IPR001944 GO:0004553|GO:0005975
Vimu10g00394 731 PRINTS Glycosyl hydrolase family 35 signature 56 74 IPR001944 GO:0004553|GO:0005975
Vimu10g00394 731 PRINTS Glycosyl hydrolase family 35 signature 608 622 IPR001944 GO:0004553|GO:0005975
Vimu10g00394 731 PRINTS Glycosyl hydrolase family 35 signature 284 299 IPR001944 GO:0004553|GO:0005975
Vimu10g00394 731 PRINTS Glycosyl hydrolase family 35 signature 35 52 IPR001944 GO:0004553|GO:0005975
Vimu10g00394 731 PRINTS Glycosyl hydrolase family 35 signature 635 651 IPR001944 GO:0004553|GO:0005975
Vimu10g00394 731 PRINTS Glycosyl hydrolase family 35 signature 168 183 IPR001944 GO:0004553|GO:0005975
Vimu10g00394 731 Gene3D Glycosidases 19 342 - -
Vimu10g00394 731 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 170 182 IPR019801 GO:0004553|GO:0005975
Vimu10g00394 731 PANTHER BETA-GALACTOSIDASE RELATED 17 716 IPR001944 GO:0004553|GO:0005975
Vimu10g00394 731 SUPERFAMILY Galactose-binding domain-like 573 715 IPR008979 -
Vimu10g00394 731 FunFam Beta-galactosidase 289 416 - -
Vimu10g00394 731 Pfam Beta-sandwich domain in beta galactosidase 344 414 IPR041392 -
Vimu10g00394 731 SUPERFAMILY (Trans)glycosidases 25 339 IPR017853 -
Vimu10g00394 731 FunFam Beta-galactosidase 20 340 - -
Vimu10g00394 731 SUPERFAMILY Galactose-binding domain-like 398 563 IPR008979 -
Vimu10g00394 731 Gene3D - 583 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00394 Vimu-Chr10 2936106 2941774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00394 10 713 Glycoside Hydrolase AT3G13750 72.051 0.0 1063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00394 - - gmx:100792629 1410.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00394 10 2936106 2941774 Vimu10g00394 10 2936106 2941774 ECH
Vimu7g01425 7 13568111 13573878 Vimu10g00394 10 2936106 2941774 PCT