Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01399 ATGATGTACGAGCAACAGCAACGTTTTCAGCAGCCCATGTCTGTCAAGGTCGATTTGAGAAAGAAAACCGAAAGAAGGAAACCCATAGAGGAAGAGAGGCTTGAAATAGTAGACTTGAGTGGCATGTCCTTGGACTCACTTCCCAACCCCTCTCTTAATTTGGCCACCATTTGCAAGTTGGACCTCTCTAATAACAATCTTCAGAATATACCAGAGTCCTTAACAGCGAGACTGCTGAACATGGTGGTTTTGGACGTGCACTCCAACCAGATTAGGTACCTTCCCAACTCCATTGGTTGCCTCTCCAAGCTCAAGGTTTTGAATGTCTCTGGCAACCTCATCGAATACCTTCCCAAAACAATTGAAAATTGCAGCAGAAGCTTAGAAGAACTGAATGCGAACTTCAACAAGTTGATCCAGCTTCCAGAGAACATAGGGTACGAGCTGATAAACCTGAAGAAGCTATCGGTGAACTCTAACAAGCTGGTGTTCCTTCCTCGCTCGACCTCTCATCTGACCGCTCTGAAGATTCTGGACATCTCTCCCAGAAGATCTCGAGAACCTGATAAACCTAGAAACTCTGAACGTGAGCCAGAACTTCCAGTACCTGGATTCTCTACCCTACTCGGTAGGGCTCCTCCTATCCCTAGTAGAACTAGACGTGAGCTACAACAAGATCAGGTCCTTGCCGGACTCCGTTGGGTGCCTGAAGAAGTTGCACAAGCTGAGCGTGGAAGGGAACCCTCTGAGTTCGCCGCCGCCGGAAGTGATGGAGCAGGGATTGCATGCGGTGAAGGAGTACCTGTGCCAGAAGATGAACGCGGGCCATCAGAGCCCCACGAAGAAGAAGTCATGGGTGGGGAAGCTGCAGAGGTGTGGGCCGCGAGGAACGTGAAGCCTTCATCATGCCTGATTACAGACCCATCGATAGCCTCGCCTCGCCGCGCTACACCGCCATGTTCTCACCTCGTCGCCTCTTCTCACCCCGCAATTACTTCAGCGCCTGAGCTCAACGTCGCCGTTTTTTCTTCTGAGCTGTGCACTAGGACCCTTTTGCTTCATGGATGGACAAGATCTATCAGATTTAGTTCAAGACTATTAAGCAACTACTGCGTTCACGTTACCCATGAAAATAAGAAACTGACTGCCCTCAGTTCCAGTGCAAGCCAAGTCTGCAATGCTGGAAATGTTATAAATCCCCAACAGTTAGTAAAAGCCAAATCACACATCTGA 1233 0.4907 MMYEQQQRFQQPMSVKVDLRKKTERRKPIEEERLEIVDLSGMSLDSLPNPSLNLATICKLDLSNNNLQNIPESLTARLLNMVVLDVHSNQIRYLPNSIGCLSKLKVLNVSGNLIEYLPKTIENCSRSLEELNANFNKLIQLPENIGYELINLKKLSVNSNKLVFLPRSTSHLTALKILDISPRRSREPDKPRNSEREPELPVPGFSTLLGRAPPIPSRTRRELQQDQVLAGLRWVPEEVAQAERGREPSEFAAAGSDGAGIACGEGVPVPEDERGPSEPHEEEVMGGEAAEVWAARNVKPSSCLITDPSIASPRRATPPCSHLVASSHPAITSAPELNVAVFSSELCTRTLLLHGWTRSIRFSSRLLSNYCVHVTHENKKLTALSSSASQVCNAGNVINPQQLVKAKSHI 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01399 410 MobiDBLite consensus disorder prediction 182 223 - -
Vimu7g01399 410 Coils Coil 121 141 - -
Vimu7g01399 410 SMART LRR_typ_2 78 100 IPR003591 -
Vimu7g01399 410 SMART LRR_typ_2 126 148 IPR003591 -
Vimu7g01399 410 SMART LRR_typ_2 54 77 IPR003591 -
Vimu7g01399 410 SMART LRR_typ_2 101 124 IPR003591 -
Vimu7g01399 410 SMART LRR_typ_2 149 172 IPR003591 -
Vimu7g01399 410 MobiDBLite consensus disorder prediction 242 261 - -
Vimu7g01399 410 MobiDBLite consensus disorder prediction 182 197 - -
Vimu7g01399 410 Pfam Leucine rich repeat 59 114 IPR001611 GO:0005515
Vimu7g01399 410 ProSiteProfiles Leucine-rich repeat profile. 56 77 IPR001611 GO:0005515
Vimu7g01399 410 PANTHER - 34 181 - -
Vimu7g01399 410 SUPERFAMILY L domain-like 33 181 - -
Vimu7g01399 410 Gene3D Ribonuclease Inhibitor 2 215 IPR032675 -
Vimu7g01399 410 SMART LRR_bac_2 125 144 - -
Vimu7g01399 410 SMART LRR_bac_2 101 120 - -
Vimu7g01399 410 SMART LRR_bac_2 54 73 - -
Vimu7g01399 410 SMART LRR_bac_2 149 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01399 Vimu-Chr7 13393678 13399682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01399 34 180 Miscellaneous Gene Families AT4G39270 35.714 1.35e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01399 - - gmx:100783239 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01399 7 13393678 13399682 Vimu7g01399 7 13393678 13399682 ECH
Vimu7g01399 7 13393678 13399682 Vimu10g00377 10 2769275 2772637 PCT