Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00377 ATGAACATCTACCATCTGCAACACCTTCATAATCATCAACCTATGATGAGGAAGAGAGAGAGAAACAAAGGCTTGGAGAAAGAGAGGCTTCAGATCATGGATTTGAGTGGCATGTCTTTGGACTCTCTTCCAAAACCTTCTCTTGATTTGGCCACCATTTCCAAGTTGGACTTATCCAACAACAATCTCCAGGAAATTCCTGAATCCTTAACTGCGAGACTGCTAAACATGGAGGTGTTGGATGTTCGGTCCAACCAGCTTAAGTCTCTTCCTAATTCCATTGGTTGTCTCTCTAAGCTTAAGGTTTTAAATGTCTCCGGCAACTTCATCGAATTCCTCCCCAAAACCATTGAGAATTGCAGAGCATTGGAAGAACTGAATGCGAACTTCAACAAGCTGAGCAAGTTACCAGACACAATAGGGTTTGAGCTGATAAACCTGAAGAAGCTCTCGGTGAACTCGAACAAGCTGGTTTTTCTTCCTAGCTCGACCTCACACCTAACATCATTGAAGGTTCTGGATGCACGGTTGAACTGCCTAAGGGCACTTCCGGAGGACCTTGAGAACCTCATCAACCTTGAGACACTGAATGTGAGCCAGAACTTCCAGTACTTGGAAACCCTCCCTTATTCCATAGGGCTGCTCTTGTCCCTGGTTGAACTTGATGTCAGCTACAACAACATCAAGACCTTGCCTGAATCCATTGGGTGCCTCAAGAACCTTAAGAAGCTAAGTGTTGAAGGGAACCCTCTGGTTTGTCCTTCGGTGGAGGTGGTGGAGCAGGGCCTGCACGTGGTGATGGAGTTCATGCAGCATAAGATGAACTCGAGCGATCAACGCCCAGCGAAGAAAAGGTGGTGGATGATGAAGATGGTGAAGTGTGGAACCTTCAATAAGCATGTGAGAGGTGGAAAACGACCAGAACATGAAGGTTACAACATGCTTAAGCACCAGAAAATCAATGGTCTTGCTTCCCCAGGCTTCATGGGAATGCTTTCACCTCTTCGCTTCTTCTCGTCACCCCGCCATTCCTTCGGCTGA 1041 0.4659 MNIYHLQHLHNHQPMMRKRERNKGLEKERLQIMDLSGMSLDSLPKPSLDLATISKLDLSNNNLQEIPESLTARLLNMEVLDVRSNQLKSLPNSIGCLSKLKVLNVSGNFIEFLPKTIENCRALEELNANFNKLSKLPDTIGFELINLKKLSVNSNKLVFLPSSTSHLTSLKVLDARLNCLRALPEDLENLINLETLNVSQNFQYLETLPYSIGLLLSLVELDVSYNNIKTLPESIGCLKNLKKLSVEGNPLVCPSVEVVEQGLHVVMEFMQHKMNSSDQRPAKKRWWMMKMVKCGTFNKHVRGGKRPEHEGYNMLKHQKINGLASPGFMGMLSPLRFFSSPRHSFG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00377 346 ProSiteProfiles Leucine-rich repeat profile. 52 73 IPR001611 GO:0005515
Vimu10g00377 346 ProSiteProfiles Leucine-rich repeat profile. 217 238 IPR001611 GO:0005515
Vimu10g00377 346 Gene3D Ribonuclease Inhibitor 2 141 IPR032675 -
Vimu10g00377 346 ProSiteProfiles Leucine-rich repeat profile. 76 97 IPR001611 GO:0005515
Vimu10g00377 346 PANTHER - 144 275 - -
Vimu10g00377 346 Pfam Leucine rich repeat 53 108 IPR001611 GO:0005515
Vimu10g00377 346 SMART LRR_typ_2 167 190 IPR003591 -
Vimu10g00377 346 SMART LRR_typ_2 74 96 IPR003591 -
Vimu10g00377 346 SMART LRR_typ_2 50 73 IPR003591 -
Vimu10g00377 346 SMART LRR_typ_2 97 120 IPR003591 -
Vimu10g00377 346 SMART LRR_typ_2 144 166 IPR003591 -
Vimu10g00377 346 SMART LRR_typ_2 215 238 IPR003591 -
Vimu10g00377 346 SMART LRR_typ_2 121 143 IPR003591 -
Vimu10g00377 346 Gene3D Ribonuclease Inhibitor 142 300 IPR032675 -
Vimu10g00377 346 SMART LRR_bac_2 97 116 - -
Vimu10g00377 346 SMART LRR_bac_2 190 211 - -
Vimu10g00377 346 SMART LRR_bac_2 144 163 - -
Vimu10g00377 346 SMART LRR_bac_2 50 69 - -
Vimu10g00377 346 SMART LRR_bac_2 167 186 - -
Vimu10g00377 346 SMART LRR_bac_2 74 93 - -
Vimu10g00377 346 SMART LRR_bac_2 120 139 - -
Vimu10g00377 346 SMART LRR_bac_2 215 234 - -
Vimu10g00377 346 SUPERFAMILY L domain-like 29 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00377 Vimu-Chr10 2769275 2772637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00377 28 255 Receptor kinase-like Gene Family AT5G46330 27.426 3.41e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00377 - - gmx:100776295 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00377 10 2769275 2772637 Vimu10g00377 10 2769275 2772637 ECH
Vimu7g01399 7 13393678 13399682 Vimu10g00377 10 2769275 2772637 PCT