Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01388 ATGTGGAATTCCTTCTGGAGATCAAGGGATCGTTTCTCCCTGGAGCAACTTAGGTACTACTCTATGTACTTAACCGATCAATTGACGAAGGTAGAAATTATTAGCGAGGTTAATAAGGGTTTTGTAATTGAGGCACTGAGATCAATTGCGGAGTTGATAACATATGGTGACCAACATGACCCCAGTTTTTTTGAATTCTTCATGGAAAAGCAAGTCATGGGTGAATTTATACGTGTTCTGAAACTTACCAGGACTGTGAGCGTTCCACTTCAGTTGCTGCAAACAGACGAAGTAGTTTCATTTCCACTTTATGTAGAGGCCATACGCTTTGCTTTTCATGAAGAGAGCATGGTTCGCACTGCAGTACGTGCTATAACTCTTAATGTCTACCATGACAGAAATCCGGGCCCAGATTCAATGTCGGCAATTATTGCTGCCACAGATGAAATTGAGGATAATCTGTACTACTTCAGTGATGTTGTCTCTGCTGGAATTCCTGATGTTGGGCGACTCATTACTGATGGCATTATGATGATTTTGATATTCCCATTACTTCTTCCTTCCCTAGGGGTCATGCCCAATAATGACATGCAAGATGCTGCTGCCCCTTCTCTATACTTACTTTGTTGCATCCTGAGGATTGTCAAAATCAAAGATTTGGCAAACACCATTGCTGAGGCCTTTACAAAGAGTTCTCGGGGTAATTTCAATTGCTTCATATCTGATCATGATTTCACATCTGAATGCCAAGGGTTAGATGGTGATAATCTCACCAAGGAGGTTCTGCTTGCTTACGTAACAAAAGGAAGTGATGTCCTTGTTTTGGGTTCTTTGAGCGTGCTTGCTATTCTGCTGCAAACTAAAGAACTCGATGAATCAATGCTAGATGGGCTTGGAATTCTTCCACAACGAAAACAACATAAAAAATTGTTATTGCAAGCTTTAGTTGGAGAGGGTTCAGGCGAAGAACAACTTTTTCCATCCAAAAGTAATAGGGATGGCATTGGTAATGATATCAATGTCTATCATAAAAAGATCAAGGAGCAGTATGGAGTATCTTTTCTGCCTTCTGATGTGGGAATAAGTCCTCGTATACATAGATTTCAAGAGGGTGAGAGAATGATGAGATGGCACGGGAGTGTGTTGTGCACGAGATTTTCAGTTATATTGGGGAGGGTGAAGAGAGATAGGGTATCTTTTGGGTATTGGAAGTTTGTTATGGATAGAGAGCTAGAGCTAGAAAAGATGCTAGACAGATTTTGGGAGGTGTTTAATAACCCTCAGGGTTTACCTCCTAAGAGGAATAAAGAGCATGCTACCACCTTGTTGGAAGGACAGGCCAATACATGTGAGGCCTCAGGAATTATCCGGCCCAACCAAAGTGCTTTCTCTGGCTCTCTCCTTTTAGTTAAAAAGAAAGATAATTCATGGAGGTTATGCATGGACTACAAAGCCTTGGACAAAGTTCCAGTCCTAAATAAGTTCCCAATCCCTGTTATTTATGAATTATTAGATGAAGTGCATGGAGCCAAATATTTCTCTAAACTGGACCTGAAGTCAGGTTATCACCAAGTAGGAGTTAAGTCTAGTGACATACATAAAACTACTTTCAGAACCCATGAAGGTCACTATGAGTATCTGGTTATGCCCTTTGGTCTTATGAATACACCTTCAACTTTTCAAGTATTAATGAATGACATATTTCGGTGTATGTTGAGGAACTGTGTTATAGTGTTTTCTTATGACATTCTCATCTATAGTCAAGATTGGGAGACCTGTATGCAACACTTAGCTGAGGTGTTCCTGGTGTTTGATAAAAAATTAGTGGCCAACACGAAGAAGTGTCATTTTGCTCAAGTTGCTATTGAGTACTTGGTGCACATTGTTTCTAACGAGGGTGTAGCAATGATCCAAGCAAGGAAGTTTGTTAAAGACTATGAGAAATTGGCAAAACCTTTAACTGCTCTGACTAAGATAGATGGGTTTAGATGGACTCCTTCTGCTTATGAGAAGGAGCTCATGGCCATCGCATTGGCCATTGAACATTGGAGATCATACCTATTAGGAAAAAATTTCACGATGATGCATGAAGAAGGCAGATTTCATAGTTTAATCCATGTTCCAGAATGGGAAAACAATGATGACATTATGGAGGAACCTCAAACATGGGTGTTGTTGGAGCTATGGGCTGAATATTGGTACAACACCAATTTCCACAGCTCCATAGGAACCACACCTTTTGAGGTGGTGTATGGACCGTCCCCACTGGTCATTACCAAATTCCTTCCAAGGGAGACATGTGTTGAAGCTGTGCAGTGCACTGAGTCAGCTGAAGCAACATCTGCTTTGAGCTCAAGTGCACATGAAAAACTAGGCCAATCTAAGAGAGTGGAGAAAAGTTTCAGCACAGGAGAATGGGTGTTCCTTAAGTTGAAGCCTCATTGGCAACAGAGCTTGAAGTCTAAGATTTGTCCTAAGCTTGCCCCTATGGTCCTTTCAAAACTACAGGGAGAACTCCAACTTCCTCCGGAGTCACGTATGCATCCTGTATTCCATGTGTCACTCCTCAAAAAGGCTGTTGGGACTTATGATATTGAAAAAGCATTGCTTACTGGACTGGATTTGGAGATTGCGGGAGATGCTGTACTTGCTGCAGTGTTGGCTACTTGCATCTTAAAGGGGAATTGGTTTTGGTCCATTGGCAAGGGAGACCAGTTGAAGGGGACAAAACTGATTCTCAAGAGAGCAGCATTGATAGCAGCCCAAGCAGGCTTGGATAATAGGCTCATTATTTGGAGAGTGTATGAGAGGAGGAATAGGAGGGTGAGAGAATGTTATATTGGGGAGGCTGAAGAGAGAGAGGGTATCTTTTGGGTATTGGAAAAGTTGAGGTGTAAGATTGAGCCTGCCGATTTCCCTCCTTGTGAGTGTGAAAAGGAGCTCCATGTTCTTGGGATAATTGCCTCCCAAAGTTTACTCCTTGTCTCATAG 2991 0.4183 MWNSFWRSRDRFSLEQLRYYSMYLTDQLTKVEIISEVNKGFVIEALRSIAELITYGDQHDPSFFEFFMEKQVMGEFIRVLKLTRTVSVPLQLLQTDEVVSFPLYVEAIRFAFHEESMVRTAVRAITLNVYHDRNPGPDSMSAIIAATDEIEDNLYYFSDVVSAGIPDVGRLITDGIMMILIFPLLLPSLGVMPNNDMQDAAAPSLYLLCCILRIVKIKDLANTIAEAFTKSSRGNFNCFISDHDFTSECQGLDGDNLTKEVLLAYVTKGSDVLVLGSLSVLAILLQTKELDESMLDGLGILPQRKQHKKLLLQALVGEGSGEEQLFPSKSNRDGIGNDINVYHKKIKEQYGVSFLPSDVGISPRIHRFQEGERMMRWHGSVLCTRFSVILGRVKRDRVSFGYWKFVMDRELELEKMLDRFWEVFNNPQGLPPKRNKEHATTLLEGQANTCEASGIIRPNQSAFSGSLLLVKKKDNSWRLCMDYKALDKVPVLNKFPIPVIYELLDEVHGAKYFSKLDLKSGYHQVGVKSSDIHKTTFRTHEGHYEYLVMPFGLMNTPSTFQVLMNDIFRCMLRNCVIVFSYDILIYSQDWETCMQHLAEVFLVFDKKLVANTKKCHFAQVAIEYLVHIVSNEGVAMIQARKFVKDYEKLAKPLTALTKIDGFRWTPSAYEKELMAIALAIEHWRSYLLGKNFTMMHEEGRFHSLIHVPEWENNDDIMEEPQTWVLLELWAEYWYNTNFHSSIGTTPFEVVYGPSPLVITKFLPRETCVEAVQCTESAEATSALSSSAHEKLGQSKRVEKSFSTGEWVFLKLKPHWQQSLKSKICPKLAPMVLSKLQGELQLPPESRMHPVFHVSLLKKAVGTYDIEKALLTGLDLEIAGDAVLAAVLATCILKGNWFWSIGKGDQLKGTKLILKRAALIAAQAGLDNRLIIWRVYERRNRRVRECYIGEAEEREGIFWVLEKLRCKIEPADFPPCECEKELHVLGIIASQSLLLVS 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01388 996 CDD RT_LTR 454 629 - -
Vimu7g01388 996 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like Protein 523 555 - -
Vimu7g01388 996 Gene3D - 704 789 IPR036397 GO:0003676
Vimu7g01388 996 Gene3D - 495 629 IPR043128 -
Vimu7g01388 996 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 431 555 - -
Vimu7g01388 996 Pfam Uncharacterised conserved protein 46 95 IPR019155 -
Vimu7g01388 996 Pfam Uncharacterised conserved protein 90 130 IPR019155 -
Vimu7g01388 996 PANTHER UNCHARACTERIZED 136 231 IPR039272 -
Vimu7g01388 996 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 470 625 IPR000477 -
Vimu7g01388 996 SUPERFAMILY DNA/RNA polymerases 417 702 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01388 Vimu-Chr7 13271655 13279052 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01388 - K19513 gmx:100786267 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01388 7 13271655 13279052 Vimu7g01388 7 13271655 13279052 ECH
Vimu7g01388 7 13271655 13279052 Vimu10g00372 10 2678089 2690105 PCT