Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01385 ATGCGCTCAGGAGTTTGTGCATTACAGCAGACCCTCACAGCTGAGGCTGCTTCAGTGTTGAAGCACTCTCTGGGGTTGGCTCGGAGGAGGGGCCATGCACAGGTCACTCCTCTGCATGTTGCTGCCACTTTGCTCAGCCTAAGAGGCAGTTCCTTGAGAAGGGCTTGTCTCAAGTCTCAGCCTCACCAAACTTCTCATCCTCTTCAATGCAGGGCTCTTGAGCTTTGCTTCAATGTGGCTCTCAACAGGCTTCCAACAGCACCTGCTCCCTTGATCCACACTCAGCCCTCTCTCTCCAATGCTCTCATTGCTGCATTGAAGAGAGCTCAGGCTCACCAGAGAAGGGGCTGCATAGAGCAACAGCAACAACAGCCTCTTCTTACCATCAAGGTTGAGCTGGAACACCTCATAACATCAATCCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGTTTCTCCAGCACTGCTGTTAAGAACAACATAGAGGATTCTTCACCCCATTCTGTTTTCCAGTGTTACAATAGCTCTGGTGGTGTGTTTTCTTCTCCTTGCTCACCCTCTTCCAGTGAGAACCACAGGGAAACTACCACCAACCCTACCAACTTCAGGCAGACTCATCATTTCTTAACTTCTAATTATGCTTCTGAATTCCACCCTTCACTTCTCTTTTCTCCGCTGAAGAGTGCACCAGTGTGTTCCTTCTCTGGTGCAGCTTCTTCAAGTAAGGATGATATCAAGGTTGTTCTGGATATTCTCCTGAGGAAGAAGAAAAAGAACACCGTGATTGTAGGTGACTCTGTGTCATTAACTGAGGGCCTTGTGGGAGAGCTAATGAGAAGGGTAGAAAGGTCAGAAGTGCCTGATGAGTTAAAGTCAACCCATTTTATCAAATTCCAGATTTCACCTGTTTCTTTGAGTTGCATGAAGAGAGATGAAGTCGAAATGAAACTCTTGGAACTAAAAAGGAAGGTGAACTCCGTTGCATCAGGAGAAAGGGGTGGCATTTTTTATATTGGAGACCTGAAATGGACCGTGGAGGAGGCAAGTCTCAGTGACAAAGAGGAAGGATCCCCAGAAGGAGAAGTTTCTGGTTACAATCCAGTTGATCATTTGGTTTCAGAAATAGGAAGGTTATTCTGTGACTGTGGAACCTCAAATAATGCTAAGGTGTGGCTCATGGCCACTTCTAGTTACCAAACATACATGAGATGTCAAATGAGGCAACCCCCTCTTGAGAAGCAGTGGGCTCTTCAGGCTGTTCCTGTTCCATCAGGTGGACTTGACTTGAGTCTTCATGCTCCCAGTGTCCTTGATTCAAAGATGACCCTCTCCCAAAATCAATCTCATGTGCCAGAAACAAAGCCCTTTGGTAATACGGAGCAGCAGGATAGGCTGAACTGTTGTGAAGAATGTGCCTCAAATTATGAAAAAGAAGCCCATTTTCTTATGCCAGATCAAAAGAAAATGATGCCGTTCTGGCTTCAGTCTCATAGCACAGAAGACCATAATAAGGATGAATTAGTCAAGTTGAAAAGAAAGTGGAATAGACTGTGCCACTGTCTCCACCAAAGCAAACAGCTTCATAACCCATTGAACTGGAACAACAGTTATAATTCGGCAAGCTCCATATCTTTTGCGAACAATGCGACACATTGCTCCACCTCCAAACTTGTTCCTCGATTCCGGCGCCAACAATCATGCATCATTGAGTTCAATTTCGGCGACAAAAGGAAAGCAACAGAGCGAGTCTTAGATTCCCTGGAGGGCATGGAAGGTAAAGAAGTAAAGACTACTCTTGCTCTTGGCAATGGCGGTTCAGGTGAGACGGTGGGGGATATAACTGATGATAGAACACTGCAAAGAGCTCATATTTGTAAACTATTGCAGGAGAATGTGCCATGGCAGTCTGAGACTGTTCCTTCAATAGCAGAAGCCTTGATCCATTCCAAATCAGCAAAGCAAAATAACAGTATTACTTGGTTACTTGTGAAAGGCAATGACACCATTGGGAAAAGAAGGTTGGCACTTGCAGTTGCAGAATCAGTTTTTGGCTCAACTGATGTGCTCCTTCAATTTGACATGCTAAAGAAAGAGACTTCAGTAGCCCCATGTTCTGAAATGCTGGCAGGAGCGCTGAAAACCCACCACCAGCTTGTGTTGCTAATAGAAAATGTTGACTTTGCTGATGCCCAGTTCAAGAAATTCCTCTCAGATGGGTTTGAAAAAGGAAAGTTTGGAAATTCCACAGAAGAGAACTCAAGCCAAGTGATACTCATTTTGACAAGTGGTGGATTCACTAGCATTGAGGAGAAGAACGAGGATTCGGTTATCAAGTTGTTATGGGAGGTTAGTGAAAGCAAGCCAAACTTAGAGACTCAATCCGTCACAAGTAAGATAAGAGAGCCTTGTTTGGGCAACAAAAGAAGAGCTGAACTTGATTTGTTTTCTGACACAAAGAGTTTTGAAGGAAGCAAGAAGAAAGTGGGTTCGAGACAGACGAGCTTTAAGAGTCTTGATCTGAACATGAAAGCTGATGAAGAGGGTGATGGGGAGGGTAAAGCAGAAGAAAGTAGTACTATTTCAAGTGATTTGAGTAGGGAAACTATAGGAGATCCAGTGGGAAAAAAGGGATTTCTTGAGTCGATTGAAAACCAGTTTGAGTTTAACAAAAGTGCAGTTAAAGAGAGAGAGATGGCAGAGTTGTTTCTGTGGAAGATAAAAGGGTCTTTTGAGGAGGTTCGTGGGAAAAAATGTTGGGAGAATTTAAGTGTAGATGAGAGGGTGATTGAGGATGTGTGTTTTGGGTGTGGTTATTTTAGCGAGAAGGTGTTTGAGAAATGGCTGAAAAAGGTATTCCAAAGCAGCTTAAAAACAGTTAACTTTGGAGTGAAGGAGGGTATAGTTTTTAGACTTTGTTGGGGTGGTAAAGGAGATACAAAAGCAGATAATGGCTTCATGAGTTCTTCTCTGCCCAAGAGTATCCAACTTAATTACTTCATAGACTGA 3015 0.4401 MRSGVCALQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRGSSLRRACLKSQPHQTSHPLQCRALELCFNVALNRLPTAPAPLIHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEHLITSILDDPSVSRVMREAGFSSTAVKNNIEDSSPHSVFQCYNSSGGVFSSPCSPSSSENHRETTTNPTNFRQTHHFLTSNYASEFHPSLLFSPLKSAPVCSFSGAASSSKDDIKVVLDILLRKKKKNTVIVGDSVSLTEGLVGELMRRVERSEVPDELKSTHFIKFQISPVSLSCMKRDEVEMKLLELKRKVNSVASGERGGIFYIGDLKWTVEEASLSDKEEGSPEGEVSGYNPVDHLVSEIGRLFCDCGTSNNAKVWLMATSSYQTYMRCQMRQPPLEKQWALQAVPVPSGGLDLSLHAPSVLDSKMTLSQNQSHVPETKPFGNTEQQDRLNCCEECASNYEKEAHFLMPDQKKMMPFWLQSHSTEDHNKDELVKLKRKWNRLCHCLHQSKQLHNPLNWNNSYNSASSISFANNATHCSTSKLVPRFRRQQSCIIEFNFGDKRKATERVLDSLEGMEGKEVKTTLALGNGGSGETVGDITDDRTLQRAHICKLLQENVPWQSETVPSIAEALIHSKSAKQNNSITWLLVKGNDTIGKRRLALAVAESVFGSTDVLLQFDMLKKETSVAPCSEMLAGALKTHHQLVLLIENVDFADAQFKKFLSDGFEKGKFGNSTEENSSQVILILTSGGFTSIEEKNEDSVIKLLWEVSESKPNLETQSVTSKIREPCLGNKRRAELDLFSDTKSFEGSKKKVGSRQTSFKSLDLNMKADEEGDGEGKAEESSTISSDLSRETIGDPVGKKGFLESIENQFEFNKSAVKEREMAELFLWKIKGSFEEVRGKKCWENLSVDERVIEDVCFGCGYFSEKVFEKWLKKVFQSSLKTVNFGVKEGIVFRLCWGGKGDTKADNGFMSSSLPKSIQLNYFID 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01385 1004 MobiDBLite consensus disorder prediction 843 859 - -
Vimu7g01385 1004 Pfam Clp amino terminal domain, pathogenicity island component 131 166 IPR004176 -
Vimu7g01385 1004 Pfam Clp amino terminal domain, pathogenicity island component 26 53 IPR004176 -
Vimu7g01385 1004 Gene3D - 9 168 IPR036628 -
Vimu7g01385 1004 Gene3D - 600 811 IPR027417 -
Vimu7g01385 1004 FunFam protein SUPPRESSOR OF MAX2 1 9 170 - -
Vimu7g01385 1004 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 971 - -
Vimu7g01385 1004 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Vimu7g01385 1004 MobiDBLite consensus disorder prediction 842 872 - -
Vimu7g01385 1004 ProSiteProfiles Clp repeat (R) domain profile. 8 170 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01385 Vimu-Chr7 13253706 13257519 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01385 - - vra:106769441 1826.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01385 7 13253706 13257519 Vimu7g01385 7 13253706 13257519 ECH
Vimu7g01385 7 13253706 13257519 Vimu10g00370 10 2669460 2673480 PCT