Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00370 ATGCGCTCAGGAGCTTGTACATTGCAACAGACCCTCACAGCGGAGGCTGCTTCAGTGTTGAAGCACTCTCTTGGGTTGGCACGCAGAAGGGGCCATGCACAGGTCACCCCTCTGCATGTGGCTGCTACTTTGCTGAGCCTAAGAGCCAGTTCCTTGAGAAGGGCTTGTCTCAAATCTCAGCCACACCAAACATCTCACCCTCTTCAGTGCAGAGCCCTTGAGCTTTGCTTCAATGTCGCCCTCAACAGGCTCCCAACAACACCTGGCCCTTTGCTCCACACACAGCCTTCTCTCTCCAATGCTCTCATTGCTGCACTCAAGAGAGCTCAGGCTCACCAGAGAAGAGGCTGCATTGAGCAGCAGCAGCAGCAGCCACTTCTCACCATCAAGGTCGAGCTTGAACAGCTCATTATATCTATCCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGTTTCTCTAGCACTGCTGTTAAGAGCAACATAGAGGACACTTCTTCCACACCTTCTGTTTTCCAGTGTTACAACACTTCTGGCGGTGTTTTCTCTTCTCCTTGCTCTCCTTCTCCCAGTGAGAACAACACACCCAGTGCCTTCAGGCAGAACCATTTCTTGGCTGCCTACACTTCTTCTGAGTTCACTTCTCCATTTCTGTTCTCTCCACAGAAGAAGGCCTCCGTGTTTCCCATCACCGAGTCTCCACCACCACCACCACCACCCTCTTCCAAGGAGGATATCAAGGTTGTTCTTGATGTCCTCTTGAGGAAGAAGAAGAGGAACACTGTGATAGTTGGTGACTCGGTGGCACTCACTGAAGGCCTTGTGGGAGAGCTGATGGGGAAGTTGGAAAGAGGAGATGTCCCTGATGAGTTGAAGTCAACACATTTCATCAAGTTTCAGCTTGCACCGGTTTCTCTGAGGTTCATGAAAAGGGAAGAAGTGGAGATGAGTCTCTCAGCACTGAAGAGGAAGGTTGATTCTGTTGCATCAGGAGGAGGAGCCATTTTCTATGTTGGAGACCTCAAGTGGACTGTAGAAGCAGCAACTTCTAGTGAAAAAGATGAAGAAGTCTTTGGCTATAACCCAGTTAATCATCTACTTGCTGAAATAGGGAAGTTGTTTTGTGATTCCAACACAAAGGTGTGGCTTGTGGCCACAGCAAGTTATCAAACATACATGAGGTGCCAAATGAGGCAACCCCCTCTTGAGACTCAGTGGGCTCTTCAAGCTGTTCCTGTTCCATCAGGTGGACTTGGCTTGAGTCTCCATGCTTCCAGTGTTCACGATTCAAAGATGACAATCTCCCAGAATCCATCTCATATGCTGGAAACAAAGCTCTTCAGTAACAGCAAGGAGGAGCAGGATAAACTCAACTGCTGTGAAGAATGTGCCTCCAATTATGAAAAGGAAGCTCAGTTGTTCAAACCAGACCAGAAGAAACTGTTACCTTCATGGCTTCAGTCTCATACCACTGCAGCCCATCAAAAGTTGGTTGAGAAAGTGGCTCATGAAGAAATTGAATGTTTTCAGGATGAGTTGCGTCAGTTGAAAAGAAAATGGAACAGACTATGCCACTGTCTGCACCAGAGCAAACAGTCTGATAACCATTGGAGCAACATTTTACACGGCAATCAGAGTTCAAATGGGAAGATCTACCCTTACAATTCATCATATCCCTGGTGGCCAAACCAGGGCAGTGTCTTCACAGATTCAAGTTCAATATCTTTCGCTGATTCACCTGCCAAACCGGCTTATAGCTCCAACATTGTCCCTCGGTTTCGGCGCCAACAATCATGCACCATTGAGTTCAATTTCAGTGATGTGACTCAGAGAAAGCCATCCACAGCCTTGGATTCTCTCAAGGGCATGGAAGGTAATAGTAACGAAGTAAAGATTACTCTTGCTCTTGGAAATTCAACATTCGGTGGTTCAGGGCAAACGGTGGAAAATATCATAACTACTGATAGAACAATGCGACGAGCTCATATTTGTAAACTGTTGCAGGAGAATGTGCCATGGCAATCTGAGACAGTTCCTTCCATAGCCGAGGCATTGGTTGATTCCAAATCTGCAAAGCAAAGTGCTACTACTTGGTTGTTGTTGCAAGGAACTGACTCTGTTGGGAAAACAAGGTTGGCACGTGCGATTGCAGAATCGGTGTTTGGCTCAGTTGATGTGCTCCTTCACTTGGACATGATGAAAAATTCAGCAACCCCATTTGCTGAAAGGGTGGCTGGAGCCTTGAAAAGCCAGGAGAAGCTTGTGATTCTGATAGAAAATTTGGATTTTGCCGATGCCCAGTTCAGGAAGTTTCTTGCAGATGGGTTTGAAAGTGGAAACTTTGGAAGTTTAAGTAGGACTGAGGAGAGTTCAGGCCGTGCAATATTTATACTGACGAATGGTGACACAAGGGGCAATGAAGAGCAGAACAATAAGGAGTCAGTGATGAAGTTGGTGCTGAAGATAAGTGAAACGAAGGCTGGTTTGGAGTCTTCATCAGCTTGTTCGGGTGAGAAGAGAAGGGCTGAAGTGCTGGATTTGTTTTCCAAGGTTAAGAATCCAAGAGTGGAGGGTAGGAAAGTGTTTTGTCGGCATTCAAGCTTCAACAATCTTGACCTGAACATGAAAGCTGATGAAGAGGATGATAATGGGGAAGAGAAAACAGGTGGAAGCAGTCCAATTTCAAGTGATTTGACAAGGGAAACAGTGGCAGATACATTGAGCTGGAATGGGGTTCTTGAGGCAATTGAGAACAGGTTTGAGTTGAATGAAAGTGCAGAGAGTGAAAGGGAGGTGGGAGAGATGTTGGTGTCAAAGATGAAAAAGTGGTTTGAGGAGGTTTATGGAAAGAAAGAAAGTGTGGTGAAATTTACTGTAGAGGAGAGGGTGATAGAAGAAATTGGTGTGGGGTGTGGAAATTTTACTAACAGCATGTTTGAGAAATGGCTGAAAGACATTTTTCAAAGCAGTTTACAGACAGTTAACTTTGGTGGGGTGGAGGGGGGTATAGGTTTTACACTTTGTTGGGATGGTAAAGGTGATAGCAAATGGGATAATGGATTCATGGGTTCATGTTTGCCCAAGAATCTCCAAGTTAACTACTTCATGGATTAA 3120 0.4587 MRSGACTLQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSLRRACLKSQPHQTSHPLQCRALELCFNVALNRLPTTPGPLLHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEQLIISILDDPSVSRVMREAGFSSTAVKSNIEDTSSTPSVFQCYNTSGGVFSSPCSPSPSENNTPSAFRQNHFLAAYTSSEFTSPFLFSPQKKASVFPITESPPPPPPPSSKEDIKVVLDVLLRKKKRNTVIVGDSVALTEGLVGELMGKLERGDVPDELKSTHFIKFQLAPVSLRFMKREEVEMSLSALKRKVDSVASGGGAIFYVGDLKWTVEAATSSEKDEEVFGYNPVNHLLAEIGKLFCDSNTKVWLVATASYQTYMRCQMRQPPLETQWALQAVPVPSGGLGLSLHASSVHDSKMTISQNPSHMLETKLFSNSKEEQDKLNCCEECASNYEKEAQLFKPDQKKLLPSWLQSHTTAAHQKLVEKVAHEEIECFQDELRQLKRKWNRLCHCLHQSKQSDNHWSNILHGNQSSNGKIYPYNSSYPWWPNQGSVFTDSSSISFADSPAKPAYSSNIVPRFRRQQSCTIEFNFSDVTQRKPSTALDSLKGMEGNSNEVKITLALGNSTFGGSGQTVENIITTDRTMRRAHICKLLQENVPWQSETVPSIAEALVDSKSAKQSATTWLLLQGTDSVGKTRLARAIAESVFGSVDVLLHLDMMKNSATPFAERVAGALKSQEKLVILIENLDFADAQFRKFLADGFESGNFGSLSRTEESSGRAIFILTNGDTRGNEEQNNKESVMKLVLKISETKAGLESSSACSGEKRRAEVLDLFSKVKNPRVEGRKVFCRHSSFNNLDLNMKADEEDDNGEEKTGGSSPISSDLTRETVADTLSWNGVLEAIENRFELNESAESEREVGEMLVSKMKKWFEEVYGKKESVVKFTVEERVIEEIGVGCGNFTNSMFEKWLKDIFQSSLQTVNFGGVEGGIGFTLCWDGKGDSKWDNGFMGSCLPKNLQVNYFMD 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00370 1039 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1000 - -
Vimu10g00370 1039 FunFam protein SUPPRESSOR OF MAX2 1 9 170 - -
Vimu10g00370 1039 Coils Coil 501 521 - -
Vimu10g00370 1039 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Vimu10g00370 1039 Gene3D - 9 170 IPR036628 -
Vimu10g00370 1039 Gene3D - 646 852 IPR027417 -
Vimu10g00370 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 655 804 IPR027417 -
Vimu10g00370 1039 Gene3D - 239 417 IPR027417 -
Vimu10g00370 1039 MobiDBLite consensus disorder prediction 876 899 - -
Vimu10g00370 1039 Pfam Clp amino terminal domain, pathogenicity island component 131 166 IPR004176 -
Vimu10g00370 1039 Pfam Clp amino terminal domain, pathogenicity island component 26 46 IPR004176 -
Vimu10g00370 1039 ProSiteProfiles Clp repeat (R) domain profile. 8 170 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00370 Vimu-Chr10 2669460 2673480 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00370 - - gmx:102660146 1625.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00370 10 2669460 2673480 Vimu10g00370 10 2669460 2673480 ECH
Vimu7g01385 7 13253706 13257519 Vimu10g00370 10 2669460 2673480 PCT