Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01379 ATGGCCACCCTCGACCCAATCCAAAACGGCACAGCCAATCCCCTGCTATCGGACAATCCCGACCCCGCCGAACCTCCCTCCACCACCGCCGACGATCCCACTTCCGAGGTCTCGGCCGAGAAGCGGTGGCCGGGATGGCCCGGCCTCTGCGTGTTCCGGCTCATCGTTCCGGTCCTCAAAGTCGGAAGCATCATTGGCCGCAAGGGGGAGCTCATCAAGAAGACTTGCGAGGAAACGAAAGCTCGCATTCGAGTCCTCGACGGCGCGGTTGGCACGCCCGATCGAATCGTTAGTGTGTCCTATTTCATTTCTAGGGTTTCTTCGTTTATATATTTTGCCAGGTTTTGTCAGGTACTCATATCAGGGAAGGAAGAGCCAGAGACACCAATTTCTCCTGCAATGGATGCTGTCATAAGGATTTTTAAACGTATCTCCGGGTTGTCTGAAATTGATGGCGAGAATAAAGCAGCAGGGCTTGCGTTTTGTTCTGTTCGTTTATTGGTTGCCTCAACGCAGGCTATCAATTTGATTGGAAAGCAGGGTTCATTAATTAAATCTATACAAGAAAATACCAGTGCATCTGTTAGAGTACTATCTGGAGATGAGGTTCCCTTTTATGCTGCTGCGGATGAGAGGATTGTTGAGCTACAGGGAGAAGCCATGAAGGTCCTTAAGGCTCTGGAAGCAGTAGTTGGGCACCTGAGGAAGTTTTTGGTTGACCCCAGTGTTCTTCCCTTATTTGAGAAAAGTTATAATGCAACAATCTCCCAAGAGCGGCAAGTAGATACTACTTGGGTTGACAAACCATCACTGCATAGTGCTTCACAGCCTAGCATTGCAAATGACATTCCTCTTTCATCAAAAAGGGATTCTCTGTTTGCTGACCGTGAAAGCCATTTGGATTCATTGCTCCCTCCTTCCACAATGTCAGTATATGGTCAAGATTCTTCACTTTCTAGTCTTCGCTCTTCAGCACTCGGTCGTTCCAGTGCTCCTCCTATTGTTACCACGGTAATACAAACAATGCAAATACCACTGTCCTACGCAGAGGACATAATTGGTATACAAGGGACTAATATTGATTACATTCGCCGCACCAGTGGAGCTATATTGACCGTGCAGGAGAGCCGGGTGCCTGATGAAATCATTGTAGAAATAAAAGGCACCTCATCTCAGGTTCAGACAGCACAACAATTGATTCAGGAAGTTATAAGTAATCACAAAGAACCTGTGGCTAGTAATTACAGCAGCAGGTTAGATTCAGGTCTGAGGTCTTCTTACCCTCAGCTGGGCAGTTCGTCTTATTCGTCATCTTCCTTGTCGCAACCCTACAGCGGTTATGGATCTTCTGGTCTAGGAGGAGGCTATAGTACTTTCAGACTTTGA 1386 0.4755 MATLDPIQNGTANPLLSDNPDPAEPPSTTADDPTSEVSAEKRWPGWPGLCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTPDRIVSVSYFISRVSSFIYFARFCQVLISGKEEPETPISPAMDAVIRIFKRISGLSEIDGENKAAGLAFCSVRLLVASTQAINLIGKQGSLIKSIQENTSASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKFLVDPSVLPLFEKSYNATISQERQVDTTWVDKPSLHSASQPSIANDIPLSSKRDSLFADRESHLDSLLPPSTMSVYGQDSSLSSLRSSALGRSSAPPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEPVASNYSSRLDSGLRSSYPQLGSSSYSSSSLSQPYSGYGSSGLGGGYSTFRL 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01379 461 ProSiteProfiles Type-1 KH domain profile. 161 230 - -
Vimu7g01379 461 Gene3D K Homology domain, type 1 50 112 IPR036612 GO:0003723
Vimu7g01379 461 Gene3D K Homology domain, type 1 335 410 IPR036612 GO:0003723
Vimu7g01379 461 Gene3D K Homology domain, type 1 162 237 IPR036612 GO:0003723
Vimu7g01379 461 ProSiteProfiles Type-1 KH domain profile. 49 100 - -
Vimu7g01379 461 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 332 406 IPR036612 GO:0003723
Vimu7g01379 461 MobiDBLite consensus disorder prediction 1 34 - -
Vimu7g01379 461 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 43 100 IPR036612 GO:0003723
Vimu7g01379 461 CDD KH-I_PEPPER_rpt1_like 50 138 - -
Vimu7g01379 461 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 40 431 - -
Vimu7g01379 461 MobiDBLite consensus disorder prediction 1 41 - -
Vimu7g01379 461 Pfam KH domain 52 100 IPR004088 GO:0003723
Vimu7g01379 461 Pfam KH domain 164 230 IPR004088 GO:0003723
Vimu7g01379 461 Pfam KH domain 340 402 IPR004088 GO:0003723
Vimu7g01379 461 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 159 240 IPR036612 GO:0003723
Vimu7g01379 461 CDD KH-I_PEPPER_rpt2_like 163 235 - -
Vimu7g01379 461 SMART kh_6 336 405 IPR004087 GO:0003676
Vimu7g01379 461 SMART kh_6 160 235 IPR004087 GO:0003676
Vimu7g01379 461 SMART kh_6 48 142 IPR004087 GO:0003676
Vimu7g01379 461 ProSiteProfiles Type-1 KH domain profile. 337 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01379 Vimu-Chr7 13199016 13204684 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01379 K21444 - gmx:100802089 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01379 7 13199016 13204684 Vimu7g01379 7 13199016 13204684 ECH
Vimu7g01379 7 13199016 13204684 Vimu10g00362 10 2557839 2564832 PCT