Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00362 ATGGCCACCGCACAACCACTCCAGAATGGTTCCGCCGGCAACCTACTATCACCGGACAATGTCTCCGCCGCACAGCCACCGGCCGAGGGGGAGGCTGACACCACTGCGGCGGCACCTCCTCCGGAGAGGAGGTGGCTAGGGTGGCCTGGGGATTGCGTATTCCGTCTCATCGTGCCAGTGGGGAAGGTTGGGAGCATCATAGGGCGCAAGGGAGAACTGATAAAGAAGATGTGTGAAGAGACACGATCTCGCATTCGCGTTCTTGACGCTCCTCTCGGCACTCCTGATCGAATTGTACTTGTATCCGGGAGGGAAGAGATAGAGGCAGCCCTTTCCCCTGCAATGGATGCGGTGATAAGGATATTCAAGCGTGTCTTTGGATTATCTGAAATTGATGCTGAGAACAAAGAATCTGCTGTTGGTCTTGCATTTTGTTCCATCCGTTTATTGGTTGCATCGACACAGGCTATTAGTTTGATTGGAAAGCAAGGCTCGTTAATAAAATCTATCCAGGAGAATACCAGTGCTTCTGTTAGAGTGCTGTCAGGAGATGAGCTGCAATTTTATGCTACTGCGGATGAGAGGATTGTGGAAATTCAGGGAGAAACCTTGAAGGTCCTTAAAGCTCTGGAAGCAGTAGTTGGCCATCTGAGGAAATTTTTGGTTGATCACAGCGTTCTTCCCCTATTTGAGAGAAATTTCAATGCACCAATCTCGCAAGACCGTCAAGCAGAGACCTGGTCTGACAAGTCATTGTTGAATAGTACTTCACGTACCAGTGTATTTCCCGATATGCCTCTTCCAACAAAAAGGGATTCTATCTTAGCTGAGCGTGAAAGTCAATTGGACTCATTGCTCCCTTCTTCCACCATGTCTCTCTATGGGCAGGAGTCTTCACTTTCTGGTGTTCGTTCTTCTGCCCTAAGCCGTGTTAGTGCTCCTATCGTTACTACGGTAATACAAACAATGCAAATACCACTATCCTATGCGGAAGACATCATTGGTATTCAAGGGACTAATATTGATTACATTCGTCGCACCAGTGGTGCTGTATTGACTGTGCAAGAGAGCAGGGTGCCTGATGAAATCATTGTAGAAATCAAAGGCACCTCATCTGAGGTTCAAACAGCGCAACAATTAATTCAGGATTTTATAAGCACTCACAAAGAACCTGTCAGTATGAATTACGGCAGGTTAGATGCAGGTTCGAGGTCTTCGTACTCTCAATTGGGCACTGCATCACGCCTCCCATCTTCGTTGTCATCACAACCATACACAGGTTATGGATCTTCTGGTTTAGGAGACTACAGTACTTTCAGGCTTTAA 1326 0.4736 MATAQPLQNGSAGNLLSPDNVSAAQPPAEGEADTTAAAPPPERRWLGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIVLVSGREEIEAALSPAMDAVIRIFKRVFGLSEIDAENKESAVGLAFCSIRLLVASTQAISLIGKQGSLIKSIQENTSASVRVLSGDELQFYATADERIVEIQGETLKVLKALEAVVGHLRKFLVDHSVLPLFERNFNAPISQDRQAETWSDKSLLNSTSRTSVFPDMPLPTKRDSILAERESQLDSLLPSSTMSLYGQESSLSGVRSSALSRVSAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAVLTVQESRVPDEIIVEIKGTSSEVQTAQQLIQDFISTHKEPVSMNYGRLDAGSRSSYSQLGTASRLPSSLSSQPYTGYGSSGLGDYSTFRL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00362 441 Gene3D K Homology domain, type 1 145 220 IPR036612 GO:0003723
Vimu10g00362 441 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 41 108 IPR036612 GO:0003723
Vimu10g00362 441 ProSiteProfiles Type-1 KH domain profile. 144 213 - -
Vimu10g00362 441 MobiDBLite consensus disorder prediction 1 21 - -
Vimu10g00362 441 SMART kh_6 317 386 IPR004087 GO:0003676
Vimu10g00362 441 SMART kh_6 50 123 IPR004087 GO:0003676
Vimu10g00362 441 SMART kh_6 143 218 IPR004087 GO:0003676
Vimu10g00362 441 Pfam KH domain 321 383 IPR004088 GO:0003723
Vimu10g00362 441 Pfam KH domain 54 111 IPR004088 GO:0003723
Vimu10g00362 441 Pfam KH domain 147 213 IPR004088 GO:0003723
Vimu10g00362 441 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 314 387 IPR036612 GO:0003723
Vimu10g00362 441 ProSiteProfiles Type-1 KH domain profile. 318 381 - -
Vimu10g00362 441 MobiDBLite consensus disorder prediction 1 43 - -
Vimu10g00362 441 CDD KH-I_PEPPER_rpt1_like 51 119 - -
Vimu10g00362 441 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 143 225 IPR036612 GO:0003723
Vimu10g00362 441 Gene3D K Homology domain, type 1 51 119 IPR036612 GO:0003723
Vimu10g00362 441 CDD KH-I_PEPPER_rpt2_like 148 218 - -
Vimu10g00362 441 Gene3D K Homology domain, type 1 316 390 IPR036612 GO:0003723
Vimu10g00362 441 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 38 403 - -
Vimu10g00362 441 ProSiteProfiles Type-1 KH domain profile. 51 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00362 Vimu-Chr10 2557839 2564832 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00362 K21444 - gmx:100815466 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00362 10 2557839 2564832 Vimu10g00362 10 2557839 2564832 ECH
Vimu7g01379 7 13199016 13204684 Vimu10g00362 10 2557839 2564832 PCT