Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01374 ATGGGAACGTTCCGGACTTTAAGGAAGGCCTACGGTGCTCTCAAAGACTCTACCAAGGTTGGCCTAGCCAAGGTCCATAGCGAATACAAGGATTTGGATGTTGCTATTGTGAAGGCTACCAGTCATGTAGAATATCCTCCAAAGGAACGTCATGTCAGAAAGATTTTCTCTGCAACTTCGGCACATCAACCACGGGCAGATGTGGCTTACTGCATACACACACTTGCTAGGAGGCTTGCAAAGACACGGAATTGGATAGTTGCTGTAAAGACATTGATAGTCATTCATAGAATATTAAGAGAGGGTGATCCTACTTTCAAAGAAGACCTCATAAACTATGCGCGTAGGGGACGTTTTCTTCAAATATCCAATTTCAAAGATGACTCGAGTCCTCAAGCTTGGGATTGTTCTGCATGGGTTCGAACCTATGCACTATTTTTAGAAGAAAGGCTTGAATGTTATAGAATCCTTAAATATGACATCGAGGCTGAGCGTTTATCAAGACCCTCACCCGTTATAACTAAGGGACATAGCAGAACACGGTCGTTGAGTAAAGAAGGGCTATTGGAGCAGCTGCCTGCACTGCAGCAACTTCTATACCGCCTAGTTGGTTGTCAGCCTGAAGGTTTGGCTGTCAGCAGTTACCTAATACAATATGCACTGGCCTTGGTATTGAAAGAGAGCTTCAAAATATATTGTGCCCTGAATGATGGAATCATAAATCTTGTGGATGTGTTCTTTGTTATGCCAAAGTATGATGCAATCAAGGCGTTACACGTTTATAAAAGGGCTAGCCAACAGGTGTACAATAGTGCTTTGCTTTCCTTCGGATCCATTCTCTTTATTGCTGATAATCTTGCCGAGTTCTATGAATACTGCAAGAGATTGGACCTCGCTAGGAATTTTCAATTTCCAATCTTGAGACAGCCACCTGCTTCTTTTCTTGCCACGATGGAAGAATACGTTAAAGAAGCACCCTTGAATGCATCTAATAGACTGGAGTATCACGAAAATGGTCAATCACCTAAAAAGGAAGCAGAACCTAAAGAATCTGAAGAGGCTCAAGCAACCGAAAAACCAGATGAAGAAAACAAAGAGGAGGAACAGGTGCATGAAGACGAACCAGAGCCTAAGGAAGAGGAAGTGGAACTTCCTCCTTTGATATCAACTGATTCTACTGATGATTTGCTGGGTCTAAACGAAATAAATCCAAAAGCCCGGGAACTAGAAGAAAGCAATGCTTTGGCGCTAGCAATTGTACCAGCCGGAGGAAATAACTCAAGCAGTCTTGATTTGGCTTACACAAATGGAACTTCTGGTTGGGAACTTGCACTGGTTACAACACCAAGTAACCATACAAGCCAAGCGCCAGATCGAAAAATGGCTGGTGGGTTTGACAAGCTATTACTAGACAGTTTGTATGAAGATGAAAAGGCTAGGAGACAACTTCAACTCCGAAATGCAGGCTATGGATATGGGGAAATGGATACACATAATCCATTCAATCATCATAATCAGCAAGATCCATTTGCGATGTCCAACAACATAGCACCTCCAACCAATGTGCAAATGGCATTCATGGCTCAGCGACAGCAACAACAAATGGTGTTCCAGCAACATCAACAACAAATGATGTTCCAGCAACATCAACAACATAATATGATGATGGGCCCTTACCAGTATCCACAGACTCAATACCATCAACAAATGCCAATCATGGGTTCTTCTAATCCATTTGAGGACCCCTTACCCGTGCCCACCCATGCTTATAATTCCATGAATCATCAAGGGAACTACAATTTAATATAG 1809 0.4262 MGTFRTLRKAYGALKDSTKVGLAKVHSEYKDLDVAIVKATSHVEYPPKERHVRKIFSATSAHQPRADVAYCIHTLARRLAKTRNWIVAVKTLIVIHRILREGDPTFKEDLINYARRGRFLQISNFKDDSSPQAWDCSAWVRTYALFLEERLECYRILKYDIEAERLSRPSPVITKGHSRTRSLSKEGLLEQLPALQQLLYRLVGCQPEGLAVSSYLIQYALALVLKESFKIYCALNDGIINLVDVFFVMPKYDAIKALHVYKRASQQVYNSALLSFGSILFIADNLAEFYEYCKRLDLARNFQFPILRQPPASFLATMEEYVKEAPLNASNRLEYHENGQSPKKEAEPKESEEAQATEKPDEENKEEEQVHEDEPEPKEEEVELPPLISTDSTDDLLGLNEINPKARELEESNALALAIVPAGGNNSSSLDLAYTNGTSGWELALVTTPSNHTSQAPDRKMAGGFDKLLLDSLYEDEKARRQLQLRNAGYGYGEMDTHNPFNHHNQQDPFAMSNNIAPPTNVQMAFMAQRQQQQMVFQQHQQQMMFQQHQQHNMMMGPYQYPQTQYHQQMPIMGSSNPFEDPLPVPTHAYNSMNHQGNYNLI 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01374 602 SUPERFAMILY GAT-like domain 178 324 - -
Vimu7g01374 602 MobiDBLite consensus disorder prediction 329 398 - -
Vimu7g01374 602 Gene3D - 6 161 IPR008942 -
Vimu7g01374 602 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Vimu7g01374 602 MobiDBLite consensus disorder prediction 337 366 - -
Vimu7g01374 602 FunFam - 173 249 - -
Vimu7g01374 602 Gene3D ANTH domain 174 338 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vimu7g01374 602 SUPERFAMILY ENTH/VHS domain 30 162 IPR008942 -
Vimu7g01374 602 PANTHER CLATHRIN ASSEMBLY PROTEIN 8 534 IPR045192 GO:0048268|GO:0072583
Vimu7g01374 602 CDD ANTH_N 32 154 - -
Vimu7g01374 602 FunFam Clathrin assembly protein AP180 6 161 - -
Vimu7g01374 602 SMART enth_2 30 161 IPR013809 -
Vimu7g01374 602 Pfam ANTH domain 31 323 IPR011417 GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01374 Vimu-Chr7 13150212 13155707 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01374 K20044 - vum:124839571 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01374 7 13150212 13155707 Vimu7g01374 7 13150212 13155707 ECH
Vimu7g01374 7 13150212 13155707 Vimu10g00356 10 2524214 2531692 PCT