Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00356 ATGGGAACGTTTCAGAGCTTCAGAAAAGCCTATGGAGCTCTCAAGGATTCTACCAAGGTTGGCCTTGCCAAAGTCAATAGCGAATACAAGGAGTTGGATATTGCAATTGTAAAAGCTACCAATCACGTGGAATATCCTCCCAAGGAGCGTCATGTTCGAAAAATATTTTATGCAACATCAGCACACCAGCCACGAGCAGATGTATCATACTGCATTCATAAACTTTCTAAGAGACTTTCCAAAACACGAAGCTGGATAGTTGCTATAAAGGCATTAATAGTCATTCATAGGACTTTGAGAGAGGGTGATCCTACCTTTAGAGAAGAGATCCTTAACTACTCACGCAGGGGACATATTCTCCAAATATCCAATTTCAAAGATGATTCAAGCCCTCAAGCATGGGATTGTTCTGCATGGGTTCGAACCTATGCACTATATTTGGAAGAAAGACTTGAATGCTTTAGGGTGCTTAAATATGATATAGAATCAGAACGTTTGACAAAAGCATCACCAACTGCAACTAAAGCACACAGTAGAACTCGATCCCTGAATAGTGAGGAGCTGTTGGGGCAGTTACCTGCTCTGCAACAACTCCTATATCGTCTTATTGCTTGTCAGCCTGAAGGATGCTCTTATAGCAACTACCTAGTGCAGTATGCATTGGCTCTGGTTTTGAAAGAAAGTTTCAAAATATATTGTGCACTCAATGATGGAATCATCAATCTCGTGGATATGTTCTTTGATATGACAAGGCATGACGCAGTGAAGGCTCTAAACATTTATAAAAGAGCTGGTCAACAGGCTGAGAATCTTGCTGACTTCTATGAATATTGCAAGGGCTTGGAACTTGCCAGGAATTTCCAGTTTCCAACACTGAGACAGCCACCTCCCTCTTTCCTTGCAACTATGGAAGAATACATTAGAGAAGCACCTCAAACAGGATATGTTAACAGGAGATTGGTAAGAGAAGATGATCAGGAATATCAAGAAAATGATGAATCATCTAAAGAAGATTCAGAATCCGATGAAACTGAAGAGCCTGAAGAAAATGAAGAACACTATGAGGAATTCAACGAGGAAGATTCGGTAGCAGGAGATGAAGCACAATCTAAGGAGGAGGTGGAGGTGGAGGTTGAGCCTCCTCCTTTGATATCAACTGATGATGGTGCAAATGATTTGTTGGGACTTAATGAAATAAATCTAAAAGCTATGGAACTGGAGGAAAACAATGCTATGGCTCTTGCAATTGTACCACCTGGTGGAAGTAACCCAAACAATCTTACATTGAGTACCATTGATGGAACTACTGGTTGGGAACTTTCATTAGTTACAGCACAAAGTAAACATACTGGTCAAGCCACAGATCGCAAAATGGCCGGTGGTTTTGATACACTGTTATTGGACAGTCTGTATGAAGATGAAAATGCCAGAAGACAACTTCAACTCCAAAATGCAGGTTATGGACATGGAGGAACCGCCATGGATGTACAGAACCCTTTTGATCATTACAACCAACAAGATCCTTTTGTAATGTCCAACAACATAGCACCTCCAACCAATGTGCAATTGGCATTAATGGCTCAACAGCAGCAACAACAACAGCAGATGATGTTCCAACATCCACAAATGTTGTACCAACAACAACCACAACAACACAACAACATGATGATGATGATTCCTCACCAGCAGCAACCACAAAACCAATACTCTCAGCAGATGCACAATCCAGATTCTCATAATCCATTTGGAGATCCTTTGCCATTACCAAACTATAATCAGAATTACATGCCCCAACAAGGAAATTACAATTTAATGTAG 1818 0.4076 MGTFQSFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATNHVEYPPKERHVRKIFYATSAHQPRADVSYCIHKLSKRLSKTRSWIVAIKALIVIHRTLREGDPTFREEILNYSRRGHILQISNFKDDSSPQAWDCSAWVRTYALYLEERLECFRVLKYDIESERLTKASPTATKAHSRTRSLNSEELLGQLPALQQLLYRLIACQPEGCSYSNYLVQYALALVLKESFKIYCALNDGIINLVDMFFDMTRHDAVKALNIYKRAGQQAENLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIREAPQTGYVNRRLVREDDQEYQENDESSKEDSESDETEEPEENEEHYEEFNEEDSVAGDEAQSKEEVEVEVEPPPLISTDDGANDLLGLNEINLKAMELEENNAMALAIVPPGGSNPNNLTLSTIDGTTGWELSLVTAQSKHTGQATDRKMAGGFDTLLLDSLYEDENARRQLQLQNAGYGHGGTAMDVQNPFDHYNQQDPFVMSNNIAPPTNVQLALMAQQQQQQQQMMFQHPQMLYQQQPQQHNNMMMMIPHQQQPQNQYSQQMHNPDSHNPFGDPLPLPNYNQNYMPQQGNYNLM 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00356 605 FunFam Clathrin assembly protein AP180 6 161 - -
Vimu10g00356 605 MobiDBLite consensus disorder prediction 327 363 - -
Vimu10g00356 605 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Vimu10g00356 605 MobiDBLite consensus disorder prediction 565 590 - -
Vimu10g00356 605 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Vimu10g00356 605 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Vimu10g00356 605 MobiDBLite consensus disorder prediction 364 378 - -
Vimu10g00356 605 PANTHER CLATHRIN ASSEMBLY PROTEIN 7 536 IPR045192 GO:0048268|GO:0072583
Vimu10g00356 605 SMART enth_2 30 161 IPR013809 -
Vimu10g00356 605 MobiDBLite consensus disorder prediction 317 390 - -
Vimu10g00356 605 Gene3D - 5 161 IPR008942 -
Vimu10g00356 605 FunFam Putative clathrin assembly protein 173 321 - -
Vimu10g00356 605 CDD ANTH_N 32 154 - -
Vimu10g00356 605 Gene3D ANTH domain 173 326 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vimu10g00356 605 SUPERFAMILY GAT-like domain 178 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00356 Vimu-Chr10 2524214 2531692 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00356 K20044 - gmx:100786060 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00356 10 2524214 2531692 Vimu10g00356 10 2524214 2531692 ECH
Vimu7g01374 7 13150212 13155707 Vimu10g00356 10 2524214 2531692 PCT