LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g01372	TTGGACCAACTTTCGTTGATTTTTCCCGTTTGTCTGGATTCTCGTTGGTTTGGAGCATTTGGGTCGGTGAAGGGTAGCCGGGTAATCATGCCGCCGGCTGTGATGGATCCACCATTGCCGGAATCATCGTCGGTGCTGTCTTTTTCCTCCGACATCATTTTTCAGGTAACGGAGCCTGATAATCGGCGATTCGGGAATCTTAGAGGTCTACAGTGGCGTATAAATCTTGGGGTATTGCCATCTTCTTCCATTGATGATCTTCGTCGTGCCACTGCTAATTCTAGAAGGAGGTATGCCAGTTTGAGAGGGCGCCTTTTGGTTGATCCTCATGTTGTAAAGGATGAAAGTAGTTTGCCCAATCTTGTCATGGATAACCCACTTTCACAAAATCCAGACAGTACATGGAGTCGCTTTTTTCGCAATGCAGAAATAGAGAGGATGATTGATCAGGATTTGTCACGTTTATACCCAGAACATGGCAACTATTTCCAGACGCCAGGATGCCAAGGCATATTGAGACGAATTTTATTACTATGGTGTCACAGACACCCAGAGTGTGGTTACAGACAAGGAATGCATGAATTACTTGCTCCGGTGCTTTATGTACTCCAATATGATGTGGAGTGTCTTGTAGAAGTTCGAAAGCTTTATGAAGATCACTTCACAGACAGATTTGATGACCTCCTTTGTCAAGAAAATGATCTTTCTTATAACTTTGATTTTAGAAAATCTTCTGACTCGAAGGAGGATGGAATTGACTCCAATGGAAATGCAATGAAAATCAAGAGTCTCGATGAGCTTGACCCCAAGATACAGAACATTGTGTTGCTAAGTGACGCTTATGGAGCAGAAGGTGAACTAGGCATTGTTTTATCTGAGAAATTCATCGAACATGATGCTTATTGTATGTTTGATGCTTTGATGAATGGGGCCCGTGGTTCAATTTCAATGATCGATTTCTTCTCCTATTCCCCTTTGCCTGGGTCCCATACTGGCTTGCCTCCTGTAATTGAAGCTTCTGCTGCATTGTATCATTTGTTGTCTCATGTGGATTCATCTCTGCATGCCCATCTTGTTGATCTCGGGGTTGAACCCCAGTACTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGCCGAGAATTTTCACTCAGCAACCTTCTAATAATCTGGGATGAAATTTTTTTATCAGATAATAGTAAAGTGGAAAAACATGTCGAGGACAATGCAGACTCTGGTTTTAGGATCTTCAATTCGTGTCGTGGAGCATTTATCTCTGCTATGGCAGTAGCAATGATGCTTCATTTAAGATCTTCACTTCTTGCTGCAGAAAATCCTACAACCTGTCTTCAGAGAATATTAAACTTCCCTGAGAACACTGATATTGAAAAACTTATAGAGAAGGCTAAATCCTTGCAGGCTCTTGCATTAAGTACTGAGATTTCATCATCGATGCCCTCATTTGTCGAGTATCATAACCATGTCAAACCAGTTATTGCAAGATCTCACACCCTTTCATCTGAATCAATCTCTCCGAAAACTCCTGTGAATTTGGTACCTGAGAGCTACTGGGAAAAAAAGTGGAGAGTTGTCCACAAGGCTGAAGAACTCAAACAAGATGGGGTGGAAAAACAGGATCCATCTCGGAAGAAGGGATGGACAGAAAAGGTGAAGTTCAGTTTGAGAAGAACAGAATCTGACCCCTCTTCACCAAGGTCTAGGAGTGGTAAAAAGGAATCCAAGTCACCAGTTAGGCGCAGTTTGTTAGAAGATCTATCTAAGGAACTTGGCTTTGAGGAAGATACTGAAAAACTCATCAGTCGTGATAATCTGCCTGCAACAGTTGAAGAGGAGCAACGGGAAGACGGTTCGGCATGCAACAACTGCTGTTCTCCTGCAGATAGATGTCAAAGTCAAAACACAAGTAGTGTGGAAAACTCACCTGCTATGTCTTGCTCAGCTAGCCCTCCTGACGAGGCCAATGATCTCAAAAATGACTGTGAGAAGAGTAGTGTTGGATCTAATTTATTCCTTGATGGAATTAGTGAAGCATCACTCAGTAGTCCCTTTGATTCACCTCTTCCAATCTCTGATCGTCCTCGGAACGTATCAAACACAACAGGGAAAAATAATAATATTTCTGCTGGAAATTCAACCACGCATTCCAAGGAGAGAAAATTGAACAAATTTCAGTGGCTATGGAAGCTTGGACGGAATAATGGTGAGTTTACTTTAGAGAAAGGAAGCGATGCTTCTGAGGCAATAAAACCTGCCAACAGTTGTGATGACCAAAGCAATACAGTACCCTCTTCTCCAGCCAATACGCATTGTAGTCCTCTTGGTTACAAAGGGGAATCTACAGAGCAGAATATGACGGACACTATGAGGAACATTGGGCAGTCAATGCTTGAGCATATCCAGGTGATAGAGAAAGCTTTCCAACAGTGGGGAGAGGGAGTATCATTGGATAACATGTCTGAAAACGTTGTGTTGGGTGAAGAGCGGGTTACTCCCATGTCAGCTCTGAAGGAGCTACGTAAAATCAGCAATATTTTGTCTGAGATATGA	2565	0.4269	MDQLSLIFPVCLDSRWFGAFGSVKGSRVIMPPAVMDPPLPESSSVLSFSSDIIFQVTEPDNRRFGNLRGLQWRINLGVLPSSSIDDLRRATANSRRRYASLRGRLLVDPHVVKDESSLPNLVMDNPLSQNPDSTWSRFFRNAEIERMIDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCHRHPECGYRQGMHELLAPVLYVLQYDVECLVEVRKLYEDHFTDRFDDLLCQENDLSYNFDFRKSSDSKEDGIDSNGNAMKIKSLDELDPKIQNIVLLSDAYGAEGELGIVLSEKFIEHDAYCMFDALMNGARGSISMIDFFSYSPLPGSHTGLPPVIEASAALYHLLSHVDSSLHAHLVDLGVEPQYFALRWLRVLFGREFSLSNLLIIWDEIFLSDNSKVEKHVEDNADSGFRIFNSCRGAFISAMAVAMMLHLRSSLLAAENPTTCLQRILNFPENTDIEKLIEKAKSLQALALSTEISSSMPSFVEYHNHVKPVIARSHTLSSESISPKTPVNLVPESYWEKKWRVVHKAEELKQDGVEKQDPSRKKGWTEKVKFSLRRTESDPSSPRSRSGKKESKSPVRRSLLEDLSKELGFEEDTEKLISRDNLPATVEEEQREDGSACNNCCSPADRCQSQNTSSVENSPAMSCSASPPDEANDLKNDCEKSSVGSNLFLDGISEASLSSPFDSPLPISDRPRNVSNTTGKNNNISAGNSTTHSKERKLNKFQWLWKLGRNNGEFTLEKGSDASEAIKPANSCDDQSNTVPSSPANTHCSPLGYKGESTEQNMTDTMRNIGQSMLEHIQVIEKAFQQWGEGVSLDNMSENVVLGEERVTPMSALKELRKISNILSEI	854

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g01372	854	MobiDBLite	consensus disorder prediction	757	783	-	-
	Vimu7g01372	854	MobiDBLite	consensus disorder prediction	599	622	-	-
	Vimu7g01372	854	ProSiteProfiles	TBC/rab GAP domain profile.	62	397	IPR000195	-
	Vimu7g01372	854	MobiDBLite	consensus disorder prediction	686	720	-	-
	Vimu7g01372	854	Pfam	Rab-GTPase-TBC domain	297	398	IPR000195	-
	Vimu7g01372	854	Pfam	Rab-GTPase-TBC domain	143	226	IPR000195	-
	Vimu7g01372	854	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	66	357	IPR035969	-
	Vimu7g01372	854	MobiDBLite	consensus disorder prediction	686	722	-	-
	Vimu7g01372	854	PANTHER	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	62	453	-	-
	Vimu7g01372	854	SMART	tbc_4	59	443	IPR000195	-
	Vimu7g01372	854	MobiDBLite	consensus disorder prediction	753	783	-	-
	Vimu7g01372	854	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	332	472	IPR035969	-
	Vimu7g01372	854	Gene3D	putative rabgap domain of human tbc1 domain family member 14 like domains	128	313	-	-
	Vimu7g01372	854	MobiDBLite	consensus disorder prediction	538	587	-	-
	Vimu7g01372	854	Gene3D	-	336	480	-	-
	Vimu7g01372	854	MobiDBLite	consensus disorder prediction	599	666	-	-
	Vimu7g01372	854	FunFam	TBC1 domain family member 5	336	480	-	-
	Vimu7g01372	854	MobiDBLite	consensus disorder prediction	623	653	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g01372	Vimu-Chr7	13140304	13146155	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g01372	K18469		-	gmx:100816501	1289.25

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu7g01372	7	13140304	13146155	Vimu7g01372	7	13140304	13146155	ECH
	Vimu7g01372	7	13140304	13146155	Vimu10g00353	10	2504629	2508859	PCT