Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00353 ATGCCACCTGCGCTTTCCGATCCGCTGTCAGCGATTACAGCCACCTCCGATGCCCTTTTGAAACCATCGGCACCGGAGAATCGGCGCTTCCGGGATCTTAGAGGGCTGCAGTGGCGGATAAATCTTGGCGTGTTACCGTGTTCAATTTCGACTTCAATTGATGATTTTCGTCGAGTCACAGCCAATTGTAGAAGAAGGTATGCTAGCTTGAGAAGGCGCCTTCTGGTTGAACCACATGTTCCAAAGAATGGGAGTAGTTCACCCAATCTTGACATTGACAATCCACTTTCACTAAATCCAGACAGTACATGGAGTCGCTTTTTCCGTAATGCAGAGCTGGAGAGAATGGTTGATCAGGATTTATCACGACTATACCCAGAACATGGCAGTTATTTTCAAGCACCAGGATGCCAAAGCATGTTGAGACGAATTTTGTTGCTGTGGTGTCTCAGGCATCCAGAATATGGATATAGACAAGGAATGCATGAGTTACTTGCTCCTCTGCTTTATGTACTGCAATCTGATTTGGAGCGTCTCTCAGAAGTTCGGAAGCTTTATGAAGATCACTTTACAGATAGATTTGATGACCTTTTAGGTCAAGAGAATGATCTTTCTTACAGCTTTGAATTTAGAAAGTCTCGAGAATTGATGGATGATGGATTTGATTCCCATGGAAAATCCATTAAAGCCAATAGTCTTGATGAACTTGATCCTGAGATACAGACCATTGTATTACTAAGTGATGCTTATGGAGCTGAAGGTGAACTGGGCATTGTTTTATCAGAGAAATTCATGGAACATGATGCATACTGTATGTTTGAGGCTTTAATGAACGGGGCTCATGGTTCAGTTGCCATGGCTGATTTCTTCTCTTCCTCACCTATATCCGGGTCCCATAGTGGCCTTCCTCCTGTGATTGAAGCTTCTACGGCATTGTATTATTTGTTGTCTCAGGTAGATTCATCTCTTCATAGCCATCTTTTTGATCTTGGAGTTGAACCCCAGTACTTTTCTCTTCGATGGTTGCGAGTTTTATTTGGTCGAGAATTTTCACTTGGCAACCTTTTGATCATCTGGGATGAGATATTTGCATCCGAGAATAACAGCAATGGAAAAGGTTCTGATGATTGTGAGTTCAGAATCTTAAGTTCACCCCGTGGAGCATTTATCTCAGCTATGGCAGTAGCAATGTTACTGCATTTAAGATCTTCACTGCTTGCAACTGAAAACCCTACAAGGTGTCTCCAGAGATTATTAAACTTCCCTGAAGACATTAATATCCAAAAACTACTAGAGAAGGCCAGATCCTTGCAGGCTCTTGCTCTAAGTGTTGATATTTCAAGCTCGTCACTTTTGTATATCGGGTTCCATTACCAAAGTAAATCGACGTATAGTAGATCTGTGACCCTTCCATCTGAATCTCTGTCTCCGAAAACTCCCCTGAGTTTGGTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTTGCCCAGAAGGCTGAAGAACAAAGGCAAGATGGTCTAGAAAAACAGGTTCCCACTCGGAAAAAGGGATGGACAGAAAAAGTAAAATTCAGTTTGAGAAGAGCAGAATCTGACCCTCCTAGGTCAAGATTGAGTGGCAAAAATTTTAGGCGCAATTTGTTGCAAGATCTGCGCAAGGCACTTGGCTCAGATGATGATGCAGAGAAAATGCAGCCAGATGAAACCATATGCCAGAATGAGAATCCTTCTGAAGCAATTCAAGAACAAGAAGACGGTAGCTTCAATGGTGACAACAATTATTCATCTGATGATAGATCTCCAGGTGTACCTTTTGGCAGTGAGGAAGACTTGTCTATATATTCTGACCCAACTAGCCCCCCCAATGAGGCCAATGATCATGAAATAATCTCACGGGAAATTAGTGTTGCATCTAATTCATCCCTGTTCGAACGCAATGAAACATCAGGTATTAGTTCGCCATTGCCAATACCCTATCCTCCTGAGGACATTTATCAGACATCGTTCTGCAATACAGGAAATTCTGAATGCAATGAAACTTCAGATACCAGTCCCAATGATCAACCCCGTCCAATCTCTGATCTTCCTGAGAACATTTCTCAGACATCAATCAGCAATACAAGAAATTCTGAACGCAATGATTCACCCCTTCCCATCTCTTATTCTCCTGACAACATTTTCTGGAATACAGGAAATTCTGAATGCAATGAAACTTTAGATACCAGTCCCAATGATCCATCCCTAACGTCAGGGTGCAATAATAACAATGCTGAAAATAAAGCCACACCTTCTAAAGAGAAAAAGCATAATAAGTTCCAGTGGCGTTGGCCCTTTGGACGGAATACTGTTGAGGCTATATCTGAGAAAGCTGGTGGTAGCTCTCAAAACAGTGCTCCACAAGCCACCTCATCCACAACTAATGACCATGGTGGTTCTGTTAGCTCCAGAGGAGAATCGGTCGACCAGAATGTTATGGGCACTTTGAAGAATATTGGGCAGTCTATGCTTGACCATATTCAGGTAATTGAATCTGTCTTCCAACAAGACCGCAAAGGCCAGGTTACTGCCATGACAGCTCTCAAAGAGCTTCGGAAAATTAGCAATCTTTTGTCAGAGATGTAG 2622 0.4264 MPPALSDPLSAITATSDALLKPSAPENRRFRDLRGLQWRINLGVLPCSISTSIDDFRRVTANCRRRYASLRRRLLVEPHVPKNGSSSPNLDIDNPLSLNPDSTWSRFFRNAELERMVDQDLSRLYPEHGSYFQAPGCQSMLRRILLLWCLRHPEYGYRQGMHELLAPLLYVLQSDLERLSEVRKLYEDHFTDRFDDLLGQENDLSYSFEFRKSRELMDDGFDSHGKSIKANSLDELDPEIQTIVLLSDAYGAEGELGIVLSEKFMEHDAYCMFEALMNGAHGSVAMADFFSSSPISGSHSGLPPVIEASTALYYLLSQVDSSLHSHLFDLGVEPQYFSLRWLRVLFGREFSLGNLLIIWDEIFASENNSNGKGSDDCEFRILSSPRGAFISAMAVAMLLHLRSSLLATENPTRCLQRLLNFPEDINIQKLLEKARSLQALALSVDISSSSLLYIGFHYQSKSTYSRSVTLPSESLSPKTPLSLVPDSYWEEKWRVAQKAEEQRQDGLEKQVPTRKKGWTEKVKFSLRRAESDPPRSRLSGKNFRRNLLQDLRKALGSDDDAEKMQPDETICQNENPSEAIQEQEDGSFNGDNNYSSDDRSPGVPFGSEEDLSIYSDPTSPPNEANDHEIISREISVASNSSLFERNETSGISSPLPIPYPPEDIYQTSFCNTGNSECNETSDTSPNDQPRPISDLPENISQTSISNTRNSERNDSPLPISYSPDNIFWNTGNSECNETLDTSPNDPSLTSGCNNNNAENKATPSKEKKHNKFQWRWPFGRNTVEAISEKAGGSSQNSAPQATSSTTNDHGGSVSSRGESVDQNVMGTLKNIGQSMLDHIQVIESVFQQDRKGQVTAMTALKELRKISNLLSEM 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00353 873 Gene3D - 305 444 - -
Vimu10g00353 873 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 102 283 - -
Vimu10g00353 873 MobiDBLite consensus disorder prediction 665 760 - -
Vimu10g00353 873 MobiDBLite consensus disorder prediction 645 822 - -
Vimu10g00353 873 MobiDBLite consensus disorder prediction 787 822 - -
Vimu10g00353 873 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 31 434 - -
Vimu10g00353 873 ProSiteProfiles TBC/rab GAP domain profile. 28 366 IPR000195 -
Vimu10g00353 873 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 32 326 IPR035969 -
Vimu10g00353 873 Pfam Rab-GTPase-TBC domain 114 178 IPR000195 -
Vimu10g00353 873 Pfam Rab-GTPase-TBC domain 264 366 IPR000195 -
Vimu10g00353 873 SMART tbc_4 25 409 IPR000195 -
Vimu10g00353 873 FunFam TBC1 domain family member 5 305 446 - -
Vimu10g00353 873 MobiDBLite consensus disorder prediction 568 600 - -
Vimu10g00353 873 MobiDBLite consensus disorder prediction 556 625 - -
Vimu10g00353 873 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 302 438 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00353 Vimu-Chr10 2504629 2508859 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00353 K18469 - gmx:100782008 1351.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00353 10 2504629 2508859 Vimu10g00353 10 2504629 2508859 ECH
Vimu7g01372 7 13140304 13146155 Vimu10g00353 10 2504629 2508859 PCT