Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01363 ATGGCAACTGAGAGTCCAATCAGGATCTCTGAAGCTGGGGGGAAATGGCCGACTCTTAAGGAAGCTGCAACGTTTGGTTCACCATCCCATCATATGGCAACAGAGGATTTGGGTATATTTTTGAATGGCCATAGGTTCCACGGCAGTGGAAAAGATGTGGTACCCAATCGTAGTGGCAGTGCACCTCCAAGCATGGAAGGCTCATTTCTTGCCATAGAAAACTTATTATCCCAAAACACCACTAGAAATGCAAGCCTGGGATCTCTCAACAGAGCTGTGCAAAAATATGATAGCGGTAAAGGGTCCTTTCATTTGTCACGAAAAACACTTGCAACACACAAGGAGGAAGCTGATGATGATTCAACCCAACAGATGTATGATAATGAGTTAGATAAGGCTAGTGGAAAATGGCATAGACAAGACGTGGCTTCAACATCATCTAAGCACAAAAAAATAGTACTGGAAGATCTTCCGCATGGCATGTCACCTGTATATAATAAGTCTCTTGGAGTGGTGGATGAACTAATTGATGTAGATACTGGTTCAAATTCTTCTTATGACCCTTCTGTCTCTACAGTGGATGCCATAAAACCTGCCATAGGTGGAGATGATACAAGGGTATCATCATTTGTTGATTACTCTGCCCCTGTCACAAGCTCATCATCTCTCAATTCCAGTGGAAGCATGGGTTTTAATGATTTAGATGTTACAGTTGTAGAATCTCAATTGAGGACTCTCACTGTATCTAATCTACCAAATTCAGAAAGTCAGAGTTATGAAGATAAATGGAAGAACAGCGTACAGAATAGTTTGATGCAGCAACGCCACCAGCAAAACTATCCATGTGAAATTCCTAGCAATTCTCAAAGTGAAAAATGTGCATATATTGGTATGGAGCAGCCTCTTCACAGTTCAAGCAAGTTCTCATCTGATGTCCAGCCTGTATTATCTGTACTGCAATCATCTGGGTATACACCTCCACTATATGCTACAGCAGCAGCTTATATGACCTCAACAAATCCTTTTTACAGTAATTTTCAGGCTTCGGGTATATATTCTCCACCGTATCTAGGTGCATATCCCTTTAGTCCCACAGCTGTTCCTCCGTATATTGCTGCATACCCTCCTCATGGTTCTGTACCACTTGTTGATGGGGCTACTGGTACCAGTTTTACTCCCCAAGCAGCAGGGGTTTCTTCTATTGTAGGAAACATTTCACATGGTGCTGAAATGATACATGCAAACAAGGTTTTTGGACAATTTGGATTTCCTCTGCAGCCTTCTTTTGGTGAGCCTTTTTACATGCAATATCATCAACAACCTTTTGTGGAGGGATACAATATACCTGGTCATCTGCTGACACCTAGAGCTAGTGTTGGTGGCCAAATTGGTCCTTATGATTCCCAAAAAAGGCCCAATAGTGATAGTGGTGCTTACTTGGATGAAAAAAAATTACATAATCAGAGAAGTGGTGCTAATTTGAATTCTAATAGAGGTGGGATAATGCATCCTGGTTACTTTGGACACCCTTCAAACATGGCTTTCGCAACCCAATATCCAAGTTCTCCACTTTCTAGACCAGTCTTGTCTGGATACCCAGAAAGTAGTTCTGGCCTTCCAGGTGGAAGGAATGAAAGGAGACCCTCTCCAGCTTCTGGCAGAAACGGAGGTTTATTATCTGGATGGCAAAGTCAAAGAGCCTTAGACAGTGCTCACAACCCAAAAATTGCAATTTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGACATCATTGGACACATAGTTGAATTTAGGCAACAGAAGTTGGAAAACTGTGGTGTTGAAGAGAAGGAGTTAGTGTTCAAAGAGGTTCTTCCACATACTTCTAAATTAATGACTGATGTATTTGGCAATTACGTAATTCAAAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAAAGAACTTGCAAATTGTCTTCTTGGTCAGATACTGCCTTTAAGTCTTCAGATGTATGGCTGTCGTGTAATCCAAAAGGCTCTCGAGGTTATCAATCTTGAACAGAAAGTTCAGCTTGTTCATGAGCTAGATGGAAATGTCATGAGATGTGTCCGTGACCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACTAAAAACATTGACTTTATAATATCTGCATTTCGTGGTCAAGTTGCTATTCTATCTATGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTTTAGAGCATTGTTCGGACGAGGTTCAATGTCAATTCATTGTGGATGAAATCTTGGAGTCAGTTTTTACTCTTGCTCAGGACCAGTATGGTAATTATGTTGCTCAGCATGTGTTGGAGAGAGGAAGGCCTCAAGAAAGGAGTCAAATTATTAGCAAGCTTTCGGGACATATTGTTCAATTAAGCCAGCATAAATTTGCATCAAATGTTGTTGAGAAATGCTTGGAGTATGGTGATTCCACTGAACGACAGCTGTTAATAACGGAGATTGTTGGACATGACAAACCACATGATAATTTGTTGACAATGATGAAAGATCAATTTGCAAATTATGTGATCCAGAGGATTCTTGAGATCTGTTCTGAAAGTCAAAGAGCAGTGTTACTTTCTCGCATAAGGCTTCATGCCCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTTTGAACAGCTATTTGGGGAAGGTTTGTACACCTAA 2739 0.4082 MATESPIRISEAGGKWPTLKEAATFGSPSHHMATEDLGIFLNGHRFHGSGKDVVPNRSGSAPPSMEGSFLAIENLLSQNTTRNASLGSLNRAVQKYDSGKGSFHLSRKTLATHKEEADDDSTQQMYDNELDKASGKWHRQDVASTSSKHKKIVLEDLPHGMSPVYNKSLGVVDELIDVDTGSNSSYDPSVSTVDAIKPAIGGDDTRVSSFVDYSAPVTSSSSLNSSGSMGFNDLDVTVVESQLRTLTVSNLPNSESQSYEDKWKNSVQNSLMQQRHQQNYPCEIPSNSQSEKCAYIGMEQPLHSSSKFSSDVQPVLSVLQSSGYTPPLYATAAAYMTSTNPFYSNFQASGIYSPPYLGAYPFSPTAVPPYIAAYPPHGSVPLVDGATGTSFTPQAAGVSSIVGNISHGAEMIHANKVFGQFGFPLQPSFGEPFYMQYHQQPFVEGYNIPGHLLTPRASVGGQIGPYDSQKRPNSDSGAYLDEKKLHNQRSGANLNSNRGGIMHPGYFGHPSNMAFATQYPSSPLSRPVLSGYPESSSGLPGGRNERRPSPASGRNGGLLSGWQSQRALDSAHNPKIAIFLEELKSGKGRRFELSDIIGHIVEFRQQKLENCGVEEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGSPEQRKELANCLLGQILPLSLQMYGCRVIQKALEVINLEQKVQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKNIDFIISAFRGQVAILSMHPYGCRVIQRVLEHCSDEVQCQFIVDEILESVFTLAQDQYGNYVAQHVLERGRPQERSQIISKLSGHIVQLSQHKFASNVVEKCLEYGDSTERQLLITEIVGHDKPHDNLLTMMKDQFANYVIQRILEICSESQRAVLLSRIRLHAHALKKYTYGKHIVARFEQLFGEGLYT 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01363 912 Gene3D - 577 907 IPR011989 -
Vimu7g01363 912 ProSiteProfiles Pumilio RNA-binding repeat profile. 694 729 IPR001313 GO:0003723
Vimu7g01363 912 Pfam Pumilio-family RNA binding repeat 705 729 IPR001313 GO:0003723
Vimu7g01363 912 Pfam Pumilio-family RNA binding repeat 849 882 IPR001313 GO:0003723
Vimu7g01363 912 Pfam Pumilio-family RNA binding repeat 807 840 IPR001313 GO:0003723
Vimu7g01363 912 Pfam Pumilio-family RNA binding repeat 772 804 IPR001313 GO:0003723
Vimu7g01363 912 Pfam Pumilio-family RNA binding repeat 662 695 IPR001313 GO:0003723
Vimu7g01363 912 Pfam Pumilio-family RNA binding repeat 629 656 IPR001313 GO:0003723
Vimu7g01363 912 Pfam Pumilio-family RNA binding repeat 605 624 IPR001313 GO:0003723
Vimu7g01363 912 Pfam Pumilio-family RNA binding repeat 734 769 IPR001313 GO:0003723
Vimu7g01363 912 FunFam Pumilio homolog 1 isoform 2 575 910 - -
Vimu7g01363 912 SUPERFAMILY ARM repeat 591 902 IPR016024 -
Vimu7g01363 912 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 267 904 - -
Vimu7g01363 912 ProSiteProfiles Pumilio RNA-binding repeat profile. 767 802 IPR001313 GO:0003723
Vimu7g01363 912 SMART pum_5 803 838 IPR001313 GO:0003723
Vimu7g01363 912 SMART pum_5 622 657 IPR001313 GO:0003723
Vimu7g01363 912 SMART pum_5 845 880 IPR001313 GO:0003723
Vimu7g01363 912 SMART pum_5 658 693 IPR001313 GO:0003723
Vimu7g01363 912 SMART pum_5 694 729 IPR001313 GO:0003723
Vimu7g01363 912 SMART pum_5 767 802 IPR001313 GO:0003723
Vimu7g01363 912 SMART pum_5 730 766 IPR001313 GO:0003723
Vimu7g01363 912 ProSiteProfiles Pumilio RNA-binding repeat profile. 658 693 IPR001313 GO:0003723
Vimu7g01363 912 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 563 906 IPR033133 GO:0003723
Vimu7g01363 912 ProSiteProfiles Pumilio RNA-binding repeat profile. 803 838 IPR001313 GO:0003723
Vimu7g01363 912 ProSiteProfiles Pumilio RNA-binding repeat profile. 622 657 IPR001313 GO:0003723
Vimu7g01363 912 ProSiteProfiles Pumilio RNA-binding repeat profile. 730 766 IPR001313 GO:0003723
Vimu7g01363 912 ProSiteProfiles Pumilio RNA-binding repeat profile. 839 880 IPR001313 GO:0003723
Vimu7g01363 912 CDD Pumilio 590 901 IPR033712 GO:0003723
Vimu7g01363 912 MobiDBLite consensus disorder prediction 526 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01363 Vimu-Chr7 12992657 12999998 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01363 K17943 - gmx:100819166 1449.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01363 7 12992657 12999998 Vimu10g00338 10 2333561 2338651 PCT