Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00338 ATGGCAACTGAGAGTCTAATTAGAATCTCTGAAGCAGGGGGTAAATGGCCCTCACATAAGGAAGCTACAGCTTTTGGTTCAACATCTCGCAACATGGCGACAGAGGATTTGGGTATACTTTTGAATGGCCATAGGTTCCATGGTGGGAGAAAGGATCTGACACCAAATCGCAGTGGCAGTGCACCTCCCAGCATAGAAGGCTCATTTTTGGCCATAGAAAACCTCTTACCCCAGCAGATCACCACTCAGAATGCAAGCTTTGCAGCTCTAAGCAGTGCTGTGCAAAATTGTGAGTCTGAAGACCAATTGCGAGCAGATCCAGCTTATTTGGCATATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCGCTTACATCCTGGGAAAACCGCCATCTAGGACGTCATATTGGCAGTTTCAGAAATAATTGGAGAATGTCTGCTGATGATAGTGATAAAAGTTCTTTACATTTGCCTCAAAGGACTCTTTCCACACACAAGGAGGAGTTGGAAGATGAATCACACCAACAGCCATATGATGATGAATTGATTAAGGCTAGCGGATTGTGGCGTAGACCTGATGCGGCTTCATTGGTATCTCAACCTAAAAACGTTGTTGATTTAATTCAGGAGGATTTTCCTCGTACCATGTCACCTGTATATAATAAGTCTCTTTCCGAAAGTCCTGGACTAGTGGATAAATCAATTGACTTAGAAGTCGGTTCTAGTTCTTCTCATGATCCCCCTGTTACTACAGTAGAAGCTGCTAAAACTAAGGTAGGTGCGGATGGTATAAGGGTGTCATCAATTGTTGATACCCATGCCCCAGTTACAAGCTCATCATCTCTTGAATCGACTGGTAGCATTGGTGTTAATGACTTAGATGTTGCTTCTGTTGCATCTCAATTAAAGGCTCTTGGTGTATCTAATCTACCACACTCAGAAAGTCTGAGTTACGAAGAAAAGTGGAAGACTAGCTACCAGATGCAACACGCAGGATTCCAGCAACAAAACAATGCATCTGATATTCCTAGCGCCAATTCTCAAAATGTAAATTCTGTGTATATTGGTAGGGAACAGTTTCCTTTTAATTCAAGCAAGTTCTCAAATGTCCAGCCACTACTGCAGTCGTCTGGGTTTACACCTCCCCTATACGCCACAGCAGCTGCTTATATGAACTCAGCAAATCCATTTTACACAAATATGCAGGCCCCGGGTATGTATACTCCACAATATGTTGGTGGATACACTGTAAATCCGACAGCTTTTCCTCCATATGTTACTGCATACCCTCCTCATGGTGCTGTACCGTTTGTTGTTGATGGAGCTACTAGTTCTAGTTATACTCCACTAACACCTGGGGTTTCAACTGGGGGAAACATTTCACATGGAACTGAAATGGTACAGGCAAACAAGTACCTTGGGCAATTTGGATTTCCTCTGCAGCCTTCTTTTGGTGATCCCATGTACATGCAATATCATCAGCAGCCTTTTGTGGAGGGATATGGTATTTCTGGTCATTTTGATCCCCTGGCTCCTAGAGCAAGTAATGTTAACCAAATTAGCCCTTATGATTCACAAAAAAGGCCCAGTACTGGTACTTATTTGGATGATAAAAAATTACCCGATCAAAGATCTGCTACTAATATGAACTCAAGAAGAGGTGGATTATTGATTCCTAGTTATTTTGGACACATGCCAAACATGGGTTTTTTAATGCAGTATCCAAGTTCACCACTTCCAAGCCCTGTTTTATCCGGATACCCAGAAGGAAGTCCAGGCCATCTAGGTGGTAATAATGAAATAAAACTTTCCCCAGCTTCTGGTAGAAATGGAGGAATAATATCTGGATGGCAAGGTCAGAGATCATTTGATGGTGGTCATGACCCCAAAATTGTTAATTTTCTTGAAGACTTAAAATCTGGGAAAGGTCGAAGATTCGAGCTATCTGATATTATTGGACATATTGTTGAATTTAGGCAACATGGAAGTCGATTTATACAGCAGAAGTTGGAAAATTGTAGTGTTGAAGAGAAGACATTGGTGTTTAAGGAGGTTCTCCCACATGCTTCTAAATTAATGACTGATGTATTTGGTAACTACGTAATACAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAGGGAACTTGCAGATCGACTGGTCGGCCAGATACTACCTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGCTCAGCTTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTTCGTGACCAAAATGGTAACCATGTAATTCAAAAGTGCATCGAATCAATTCCAACCAAAAAAATTAATTTTATACTATCTGCATTTTGTGGTCAAGTTGCTATTCTATCAATGCATCCCTATGGATGTCGAGTAATACAGAGAGTACTAGAACATTGCACGGATGAGAGTCAATGTCAGTTTATTGTGGATGAAATCTTGGAGTCAGTTTGTGATCTTGCTCAGGACCAGTATGGCAATTATGTTACACAGCATGTCTTGGAGAGAGGAAAGCCTCAAGAAAGGAGCCAAATTATCAGCAAGTTGTCAGGACATATTGTTGAATTAAGCCAGCATAAGTTTGCTTCAAATGTTGTAGAAAAATGTTTGGAGTATGGTGATGCCACTGAACGGGAGATGCTAATTGCTGAGATATTTGGGCATGGTGAACAAAGTGATAATTTATTGATAATGATGAAAGATCAATTTGCTAATTATGTGGTCCAGAAGGTCATTGATATCTGTTCTGAAAAACAGCAAGCAATGTTACTTGCTCATGTAAGAATTCATGCTCATGCTTTGAAGAAATACACTTATGGGAAACACATCGTGGCTCGGTTGGAACATCAATTTGGAGGTGTGTACTTCTAG 2931 0.4111 MATESLIRISEAGGKWPSHKEATAFGSTSRNMATEDLGILLNGHRFHGGRKDLTPNRSGSAPPSIEGSFLAIENLLPQQITTQNASFAALSSAVQNCESEDQLRADPAYLAYYSSNVNLNPRLPPPLTSWENRHLGRHIGSFRNNWRMSADDSDKSSLHLPQRTLSTHKEELEDESHQQPYDDELIKASGLWRRPDAASLVSQPKNVVDLIQEDFPRTMSPVYNKSLSESPGLVDKSIDLEVGSSSSHDPPVTTVEAAKTKVGADGIRVSSIVDTHAPVTSSSSLESTGSIGVNDLDVASVASQLKALGVSNLPHSESLSYEEKWKTSYQMQHAGFQQQNNASDIPSANSQNVNSVYIGREQFPFNSSKFSNVQPLLQSSGFTPPLYATAAAYMNSANPFYTNMQAPGMYTPQYVGGYTVNPTAFPPYVTAYPPHGAVPFVVDGATSSSYTPLTPGVSTGGNISHGTEMVQANKYLGQFGFPLQPSFGDPMYMQYHQQPFVEGYGISGHFDPLAPRASNVNQISPYDSQKRPSTGTYLDDKKLPDQRSATNMNSRRGGLLIPSYFGHMPNMGFLMQYPSSPLPSPVLSGYPEGSPGHLGGNNEIKLSPASGRNGGIISGWQGQRSFDGGHDPKIVNFLEDLKSGKGRRFELSDIIGHIVEFRQHGSRFIQQKLENCSVEEKTLVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRRELADRLVGQILPLSLQMYGCRVIQKALEVIELEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKKINFILSAFCGQVAILSMHPYGCRVIQRVLEHCTDESQCQFIVDEILESVCDLAQDQYGNYVTQHVLERGKPQERSQIISKLSGHIVELSQHKFASNVVEKCLEYGDATEREMLIAEIFGHGEQSDNLLIMMKDQFANYVVQKVIDICSEKQQAMLLAHVRIHAHALKKYTYGKHIVARLEHQFGGVYF 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00338 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 910 945 IPR001313 GO:0003723
Vimu10g00338 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 832 867 IPR001313 GO:0003723
Vimu10g00338 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 687 722 IPR001313 GO:0003723
Vimu10g00338 976 Pfam Nucleic acid binding protein NABP 302 652 IPR012940 -
Vimu10g00338 976 Pfam Pumilio-family RNA binding repeat 692 723 IPR001313 GO:0003723
Vimu10g00338 976 Pfam Pumilio-family RNA binding repeat 872 905 IPR001313 GO:0003723
Vimu10g00338 976 Pfam Pumilio-family RNA binding repeat 770 793 IPR001313 GO:0003723
Vimu10g00338 976 Pfam Pumilio-family RNA binding repeat 727 760 IPR001313 GO:0003723
Vimu10g00338 976 Pfam Pumilio-family RNA binding repeat 799 834 IPR001313 GO:0003723
Vimu10g00338 976 Pfam Pumilio-family RNA binding repeat 663 689 IPR001313 GO:0003723
Vimu10g00338 976 Pfam Pumilio-family RNA binding repeat 837 869 IPR001313 GO:0003723
Vimu10g00338 976 Pfam Pumilio-family RNA binding repeat 916 946 IPR001313 GO:0003723
Vimu10g00338 976 MobiDBLite consensus disorder prediction 517 554 - -
Vimu10g00338 976 SUPERFAMILY ARM repeat 637 968 IPR016024 -
Vimu10g00338 976 Gene3D - 634 971 IPR011989 -
Vimu10g00338 976 CDD Pumilio 648 967 IPR033712 GO:0003723
Vimu10g00338 976 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 109 969 - -
Vimu10g00338 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 868 903 IPR001313 GO:0003723
Vimu10g00338 976 SMART pum_5 910 945 IPR001313 GO:0003723
Vimu10g00338 976 SMART pum_5 687 722 IPR001313 GO:0003723
Vimu10g00338 976 SMART pum_5 723 758 IPR001313 GO:0003723
Vimu10g00338 976 SMART pum_5 795 831 IPR001313 GO:0003723
Vimu10g00338 976 SMART pum_5 759 794 IPR001313 GO:0003723
Vimu10g00338 976 SMART pum_5 868 903 IPR001313 GO:0003723
Vimu10g00338 976 SMART pum_5 832 867 IPR001313 GO:0003723
Vimu10g00338 976 SMART pum_5 653 686 IPR001313 GO:0003723
Vimu10g00338 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 759 794 IPR001313 GO:0003723
Vimu10g00338 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 795 831 IPR001313 GO:0003723
Vimu10g00338 976 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 633 971 IPR033133 GO:0003723
Vimu10g00338 976 FunFam Pumilio homolog 1 isoform 2 632 974 - -
Vimu10g00338 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 723 758 IPR001313 GO:0003723
Vimu10g00338 976 MobiDBLite consensus disorder prediction 517 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00338 Vimu-Chr10 2333561 2338651 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00338 K17943 - gmx:100811036 1725.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01363 7 12992657 12999998 Vimu10g00338 10 2333561 2338651 PCT