Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01359 ATGTCTGTTTCTATGAGAGATTTGGATCCAGCTTTCAAGGGAGCTGGCCAAAAGGATGGGCTTGAAATATGGCGTATCGAGAATTTTAATCCAGTTCCTATCCCTCAGTCATCTTATGGAAAGTTTTTCACTGGGGATTCCTATATGATCTTGAAGACAACTGCTTCAAAAAGTGGTGCTCTGCGTTATGATATCCATTATTGGCTTGGTAAAGAGACCAGTCAGGATGAGGCCGGGGCTGCAGCCATCAAGACAGTCGAGTTGGATGCAGCTCTGGGAGGACGGGCTGTTCAGTATCGTGAAGTACAAGGCCACGAAACTGAAAAGTTCCTCTCTTATTTCAAACCATGCATCATACCTCAAGAAGGTGGAGCTGCCTCTGGTTTTAAACACGTGGAGGCCGAAAAACATAAGACACGGTTGTTTGTATGCAAAGGGAAACATGTGGTTCCATTTGCTCGATCTTCGCTAAACCATGATGATGTTTTTATTCTGGATACTGAGTCCAAAATTTTCCAATTTAATGGTTCCAACTCATGTATTCAAGAAAGGGCCAAAGCATTGGAGGTTGTACAGTTTATTAAGGATACCTACCATGATGGGAAATGTGAGATAGCTTCCGTTGAGGATGGAAAGTTGATGTCTGATTCTGAAAGTGGAGAATTCTGGGCTTGCTTCGGGGGCTTTGCTCCTCTTCCACGGAGAACAGTCAGTGATGATGATAAGTTTGCTGATTCTCATCCTCCAGAGCTACTTTGTGTTGGCAAGGGGAAGACAGAACCTGTTGAAACTGATTCCTTGACAAAGAAATTGCTGGAGACAAACAAATGCTATATTTTAGATTGTGGGTTGGAGGTGTATGTATGGATGGGAAGAAACACATCTCTTGATGAAAGAAAAAGTGCAAGTGGAGCTGCAGATAAGTTAGTCAGTGGCACTGGTCGACCAAAGTCCCATATAGTTCGTGTGATTGAAGGATTTGAAACAGTAATGTTCAAGTCCAAGTTTGATTCTTGGCCTCGGGCATCTCAAATGATGTCTGAAGATGGTCGTGGCAAGGTAGCAGCACTTCTAAAACGTCAAGGATTGGATGTCAAGGGTCTCTTAAAATCTGAACCTGTAAAAGAAGAACCTCAACCGTATATAGATTGCACAGGACATTTGCAGGTTTGGCGTGTTAATAGCAAGGAAAAGATTCTTCTTCCAGCCACTGATCAGTCAAAATTTTATAGTGGAGATTGCTACATCTTTCAATATTCATATCCTGGAGAAGATAAGGAAGAACATCTTATAGGAACATGGGTTGGAAAGACCAGTATTGAGGAAGAGAGGGCTTCAGCTCTTTCACTGGCAAACAAAATGGTTGAATCAATGAAGTTTCTTCCTTGCCAGGTTCGTATCTATGAAGGCAGTGAACCAATTCAATTCCATGCCATCCTCCAAAGTTGTATTGTCTTCAAGGTTTGTGGGATTCTGGGTGGACTTAGTGATGGATACAAGAATTACATTGCAGAGAAGGAAATTCCAGATGAGACATACAGTGAGGATGGTCTTGCATTATTCCGCATCCAGGGTTTTGGGCCAGACAATATGCAAGCTATACAAGTTGAACCAGTTGCTTCCTCCTTGAATTCCACTTACTGCTACATACTTCATAGTGATTCAACTGTTTTTACGTGGTCTGGAGGTTTAGCAACTTCAGATGATCAAGAGCTTGTTGACAGAATGCTGGATTTGATTAAGCCGGATTTACCATGCAAATCACATAAGGAAGGCGTAGAATCGGAATTGTTTTGGGATTTGTTGAGAGGAAAATCAGAATATCCCAAAAGACTGGTCAGTGTGCTATTGGTCACTTTTGTAGTAAGTAAAGGTGCATTTAAGATAGATCTAGATGGTGAATTAAACTGGGGTGTGATTTCATCCCCAATAAAATCTCATCGCTATGTCGTGAAAGAGATATACAACTTTTCCCAGGATGATTTGATGACAGAAGATATTTGCATCTTGGATTGTCACGCTGAAATCTTCGTCTGGGTTGGCCAGCAGGTTGACCCAAAGATTAAAATACAGGCTCTAACAATTGGTGAGAAATTTCTTGAGCATGACTTTCTTCTAGAAAATTTATCTCGTGAAGCTCCAATATATATTGTCATGGAAGGCAGTGAGCCACCTTTCTTCACTCGCTTCTTTAAATGGGAGTCTGCAAAATCTGCAATGCTGGGAAACTCGTTTCAAAGGAAGCTTGCAATCCTCAAAAATGGGGGAGCGGCACTCGTACTTAAACATAAGCGAAGAGCATCAGTATCTTATGGGGGAAGGTCTGGTGGTGTGCCAGATAAATCTCAGCGTTCCCGTAGCATGTCTGTCAGTCCTGATCGTGTTCGTGTGAGGGGCAGATCTCCAGCCTTTAATGCTCTAGCAGCTAATTTTGAGAACACAAATACAAGGAACCTTTCAACTCCACCTCCAATGGTTAGAAAACTGTACCCAAAATCCGGGGCACAGGATACAGTGAAACCGGCATCTAAATTTTCAGCCATATCTCATCTTACTTCTAGTTTTGAACCACCATCAGCTCGAGAAAATTTGATTCCTCGGTCCCAAAAAGTGGGTTCAGTTACCACCATATCAAACCCCGAGACAACTGACGAGGGGGTTTCTATGAGCAAGAGAATAGAATCTCTTACCATAAAGGAGGATGTGCAAGAGGGTGAAGCTGAAGATGATGAAGGTCTCCCAGTTCACCCATATGATCGCATTAACACAGATTCTACAGATCCTATAACAGATATTGACGTTACTAAACGAGAGGCTTATTTGTCATCTGCCGAGTTCCAAGAGAAATTAGGGATGGCTAAGAATGAATTTTACAAGTTACCAAAATGGAAACAGAACAAACTCAAGATGGCAGTTCGCTTATTCTGA 2928 0.4208 MSVSMRDLDPAFKGAGQKDGLEIWRIENFNPVPIPQSSYGKFFTGDSYMILKTTASKSGALRYDIHYWLGKETSQDEAGAAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGAASGFKHVEAEKHKTRLFVCKGKHVVPFARSSLNHDDVFILDTESKIFQFNGSNSCIQERAKALEVVQFIKDTYHDGKCEIASVEDGKLMSDSESGEFWACFGGFAPLPRRTVSDDDKFADSHPPELLCVGKGKTEPVETDSLTKKLLETNKCYILDCGLEVYVWMGRNTSLDERKSASGAADKLVSGTGRPKSHIVRVIEGFETVMFKSKFDSWPRASQMMSEDGRGKVAALLKRQGLDVKGLLKSEPVKEEPQPYIDCTGHLQVWRVNSKEKILLPATDQSKFYSGDCYIFQYSYPGEDKEEHLIGTWVGKTSIEEERASALSLANKMVESMKFLPCQVRIYEGSEPIQFHAILQSCIVFKVCGILGGLSDGYKNYIAEKEIPDETYSEDGLALFRIQGFGPDNMQAIQVEPVASSLNSTYCYILHSDSTVFTWSGGLATSDDQELVDRMLDLIKPDLPCKSHKEGVESELFWDLLRGKSEYPKRLVSVLLVTFVVSKGAFKIDLDGELNWGVISSPIKSHRYVVKEIYNFSQDDLMTEDICILDCHAEIFVWVGQQVDPKIKIQALTIGEKFLEHDFLLENLSREAPIYIVMEGSEPPFFTRFFKWESAKSAMLGNSFQRKLAILKNGGAALVLKHKRRASVSYGGRSGGVPDKSQRSRSMSVSPDRVRVRGRSPAFNALAANFENTNTRNLSTPPPMVRKLYPKSGAQDTVKPASKFSAISHLTSSFEPPSARENLIPRSQKVGSVTTISNPETTDEGVSMSKRIESLTIKEDVQEGEAEDDEGLPVHPYDRINTDSTDPITDIDVTKREAYLSSAEFQEKLGMAKNEFYKLPKWKQNKLKMAVRLF 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01359 975 MobiDBLite consensus disorder prediction 901 929 - -
Vimu7g01359 975 FunFam Villin-4 243 349 - -
Vimu7g01359 975 CDD gelsolin_S4_like 380 479 - -
Vimu7g01359 975 CDD gelsolin_S3_like 255 338 - -
Vimu7g01359 975 CDD gelsolin_S2_like 138 227 - -
Vimu7g01359 975 Pfam Villin headpiece domain 940 975 IPR003128 GO:0003779|GO:0007010
Vimu7g01359 975 SUPERFAMILY Actin depolymerizing proteins 648 740 - -
Vimu7g01359 975 PANTHER VILLIN 6 965 IPR007122 GO:0051015
Vimu7g01359 975 Pfam Gelsolin repeat 149 212 IPR007123 -
Vimu7g01359 975 Pfam Gelsolin repeat 655 727 IPR007123 -
Vimu7g01359 975 Pfam Gelsolin repeat 28 111 IPR007123 -
Vimu7g01359 975 Pfam Gelsolin repeat 260 332 IPR007123 -
Vimu7g01359 975 FunFam Villin-like 1 132 242 - -
Vimu7g01359 975 Gene3D Severin 133 242 IPR029006 -
Vimu7g01359 975 CDD gelsolin_S6_like 645 733 - -
Vimu7g01359 975 CDD gelsolin_S1_like 12 124 - -
Vimu7g01359 975 Gene3D Severin 517 611 IPR029006 -
Vimu7g01359 975 Gene3D Severin 7 132 IPR029006 -
Vimu7g01359 975 SUPERFAMILY Actin depolymerizing proteins 376 524 - -
Vimu7g01359 975 SMART VILL_6 137 229 IPR007122 GO:0051015
Vimu7g01359 975 SMART VILL_6 249 339 IPR007122 GO:0051015
Vimu7g01359 975 SMART VILL_6 386 483 IPR007122 GO:0051015
Vimu7g01359 975 SMART VILL_6 637 734 IPR007122 GO:0051015
Vimu7g01359 975 SMART VILL_6 516 605 IPR007122 GO:0051015
Vimu7g01359 975 SMART VILL_6 19 117 IPR007122 GO:0051015
Vimu7g01359 975 Gene3D Severin 382 490 IPR029006 -
Vimu7g01359 975 ProSiteProfiles Headpiece (HP) domain profile. 910 975 IPR003128 GO:0003779|GO:0007010
Vimu7g01359 975 Gene3D Villin headpiece domain 913 975 IPR036886 GO:0003779|GO:0007010
Vimu7g01359 975 SUPERFAMILY VHP, Villin headpiece domain 901 975 IPR036886 GO:0003779|GO:0007010
Vimu7g01359 975 SUPERFAMILY Actin depolymerizing proteins 510 610 - -
Vimu7g01359 975 Gene3D Severin 243 352 IPR029006 -
Vimu7g01359 975 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Vimu7g01359 975 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 250 421 IPR036180 -
Vimu7g01359 975 PRINTS Gelsolin family signature 430 448 IPR007122 GO:0051015
Vimu7g01359 975 PRINTS Gelsolin family signature 405 421 IPR007122 GO:0051015
Vimu7g01359 975 PRINTS Gelsolin family signature 659 681 IPR007122 GO:0051015
Vimu7g01359 975 PRINTS Gelsolin family signature 318 339 IPR007122 GO:0051015
Vimu7g01359 975 PRINTS Gelsolin family signature 531 551 IPR007122 GO:0051015
Vimu7g01359 975 MobiDBLite consensus disorder prediction 770 796 - -
Vimu7g01359 975 SUPERFAMILY Actin depolymerizing proteins 129 242 - -
Vimu7g01359 975 SMART VHP_1 940 975 IPR003128 GO:0003779|GO:0007010
Vimu7g01359 975 FunFam Gelsolin 6 131 - -
Vimu7g01359 975 CDD gelsolin_S5_like 519 607 - -
Vimu7g01359 975 FunFam Gelsolin 517 611 - -
Vimu7g01359 975 Gene3D Severin 640 749 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01359 Vimu-Chr7 12952113 12965534 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01359 - - gmx:100807762 1637.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01359 7 12952113 12965534 Vimu7g01359 7 12952113 12965534 ECH
Vimu7g01359 7 12952113 12965534 Vimu10g00711 10 6155242 6157984 PCT
Vimu10g00335 10 2292741 2299398 Vimu7g01359 7 12952113 12965534 PCT