Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00335 ATGGCAGTTTCCATGAGAGATCTGGATCCAGCTTTTCAGGGAGCTGGACAAAAGGCTGCATTGTTTTCCTTAACCTGCTACAGTGGACTTGAGATATGGCGTATTGAGAATTTTAATCCAGTTCCTGTTCCAAAGTCCTCTTATGGGAAATTTTTCACTGGAGACTCCTATGTGATCTTAAAGACAACTGCATCAAAAAGTGGTGCTTTGCGCCACGATGTCCATTACTGGCTTGGTAAAGACACCAGTCAGGATGAAGCTGGTGCTGCAGCCATCAAAACAGTTGAGCTAGATGCAGCTCTTGGAGGACGTGCTGTTCAGTATCGTGAAGTTCAAGGCCATGAAACTGAAAAGTTCCTGTCTTATTTCAAACCATGTATTATCCCTCAAGAAGGTGGAGTTGCTTCTGGTTTCCAACATCCTGAGGCTGAAAAGCATAAGACACGGTTGTTTGTATGCAGGGGAAAACATGTTGTACATGTCAAAGAGGCAAACATTGTTTTCTTCTTGTTTAGTAACAATTTATGTTGGTTACAGGTTCCATTTGCTAGAGCTTCACTGAACCATGATGATATTTTTGTTCTGGATACTGAATCAAAAATTTTCCAATTTAATGGTTCCAATTCATCAATCCAAGAAAGGGCTAAAGCTTTGGAAGTTGTACAGTATATTAAGGATACCTACCATGATGGAAAATGTGATGTAGCTGCTGTTGAGGATGGAAAGTTGATGGCTGATCCTGAAACTGGGGAATTCTGGGGTTTCTTTGGGGGATTTGCTCCCCTTCCAAGAAAAACAGCCGGTGATGATGATAAGCCTACTGATACTAGCCCTCCGAAGCTGCTCTGCATTGAAAAGGGACAGGCAGAACCTGTGGAGGCTGCTGATTCTTTGAAAAGAGAATTACTAGACACAAATAAATGCTATATTCTTGATTGTGGGTTTGAAGTTTTTGTCTGGATGGGTAGAAATACTTCTCTCGATGAAAGAAAAAGTGCAAGTGGAGTTGCAGATGAGTTAGTAAGAGGCATTGATAAACTGAAACCCCAAATAATTCGTGTGATAGAAGGATTTGAAACAGTAATGTTCAGGTCCAAATTTGATTCTTGGCCTCAGACAACTGATGTAACAGTATCTGAAGATGGTCGTGGCAAGGTAGCTGCTCTTCTAAAACGTCAAGGAGTAAATGTGAAGGGTTTGTTGAAAGCTGATCCAGTGAGGGAAGAACCTCAACCCCACATTGATTGCACAGGGCATTTGCAGGTTTGGCGCGTGAACGGTCAGGAAAAGATTCTTCTTCAAGCTTCTGATCAATCAAAATTTTATAGTGGAGATTGCTACATCTTTCAGTATACATATCCTGGAGAGGATAAAGAAGATTGTCTTATTGGAACGTGGATTGGAAAAAATAGTGTTGAGGAAGAACAAGCTTCAGCTAACTCATTGGCAAGCAAAATGGTTGAGTCAATGAAGTTTCTTGCTTGCCAGGCTCGTATATATGAAGGCAATGAACCGGTTCAATTTCATTCTATCATTCAAAGTTTCATTGTTTTTAAGGGTGGGCTTGGTGAAGGATACAAGGCTTACATTGCTGGAAAGGAAATTCCTGATGAGACATACAATGAGAATGGTGTTGCATTGTTCCGCATCCAAGGCTCTGGACCAGACAATATGCAAGCGATACAAGTTGAACCACCAAATTTACAATCCAAACCACAGAGGGAAGGTTCTGAATCTGAACAGTTTTGGGATTTGTTAGGAGGAAAATCAGAATATCCCAGTCAAAAGATCCTTAGAGAGGCTGAAAGTGATCCTCACCTATTTTCTTGTCACTTCTCAAAAGGTAAGAGATAG 1854 0.4105 MAVSMRDLDPAFQGAGQKAALFSLTCYSGLEIWRIENFNPVPVPKSSYGKFFTGDSYVILKTTASKSGALRHDVHYWLGKDTSQDEAGAAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGVASGFQHPEAEKHKTRLFVCRGKHVVHVKEANIVFFLFSNNLCWLQVPFARASLNHDDIFVLDTESKIFQFNGSNSSIQERAKALEVVQYIKDTYHDGKCDVAAVEDGKLMADPETGEFWGFFGGFAPLPRKTAGDDDKPTDTSPPKLLCIEKGQAEPVEAADSLKRELLDTNKCYILDCGFEVFVWMGRNTSLDERKSASGVADELVRGIDKLKPQIIRVIEGFETVMFRSKFDSWPQTTDVTVSEDGRGKVAALLKRQGVNVKGLLKADPVREEPQPHIDCTGHLQVWRVNGQEKILLQASDQSKFYSGDCYIFQYTYPGEDKEDCLIGTWIGKNSVEEEQASANSLASKMVESMKFLACQARIYEGNEPVQFHSIIQSFIVFKGGLGEGYKAYIAGKEIPDETYNENGVALFRIQGSGPDNMQAIQVEPPNLQSKPQREGSESEQFWDLLGGKSEYPSQKILREAESDPHLFSCHFSKGKR 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00335 617 Gene3D Severin 142 272 IPR029006 -
Vimu10g00335 617 SMART VILL_6 418 515 IPR007122 GO:0051015
Vimu10g00335 617 SMART VILL_6 166 259 IPR007122 GO:0051015
Vimu10g00335 617 SMART VILL_6 279 370 IPR007122 GO:0051015
Vimu10g00335 617 SMART VILL_6 28 126 IPR007122 GO:0051015
Vimu10g00335 617 Gene3D Severin 17 141 IPR029006 -
Vimu10g00335 617 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 279 453 IPR036180 -
Vimu10g00335 617 FunFam Villin-like 1 141 272 - -
Vimu10g00335 617 CDD gelsolin_S3_like 279 369 - -
Vimu10g00335 617 SUPERFAMILY Actin depolymerizing proteins 139 262 - -
Vimu10g00335 617 Gene3D Severin 414 526 IPR029006 -
Vimu10g00335 617 CDD gelsolin_S1_like 12 133 - -
Vimu10g00335 617 PANTHER VILLIN 8 565 IPR007122 GO:0051015
Vimu10g00335 617 CDD gelsolin_S4_like 414 511 - -
Vimu10g00335 617 FunFam Gelsolin 10 140 - -
Vimu10g00335 617 SUPERFAMILY Actin depolymerizing proteins 24 156 - -
Vimu10g00335 617 PRINTS Gelsolin family signature 437 453 IPR007122 GO:0051015
Vimu10g00335 617 PRINTS Gelsolin family signature 349 370 IPR007122 GO:0051015
Vimu10g00335 617 PRINTS Gelsolin family signature 495 515 IPR007122 GO:0051015
Vimu10g00335 617 PRINTS Gelsolin family signature 462 480 IPR007122 GO:0051015
Vimu10g00335 617 Pfam Gelsolin repeat 295 363 IPR007123 -
Vimu10g00335 617 Pfam Gelsolin repeat 179 240 IPR007123 -
Vimu10g00335 617 Pfam Gelsolin repeat 37 120 IPR007123 -
Vimu10g00335 617 Pfam Gelsolin repeat 436 487 IPR007123 -
Vimu10g00335 617 FunFam Villin-4 411 547 - -
Vimu10g00335 617 Gene3D Severin 273 382 IPR029006 -
Vimu10g00335 617 SUPERFAMILY Actin depolymerizing proteins 408 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00335 Vimu-Chr10 2292741 2299398 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00335 - - gmx:100809968 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00335 10 2292741 2299398 Vimu7g01359 7 12952113 12965534 PCT