Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01098 ATGGGTTGTCAGATAAGGCTTCTGGGTCTGTGTCTATGGATGTACTTGGCAAGCTTAAGCTTCATTTCAGTTGGTTCTATGTGTGCAAGAGTAGGTGAAGTTGAGAAAGGGATTGTTTTAGTTCATGGGAAATGTGCTATTGGAAGCATTGACGATGATTTTGTGTGTGCAACTCTGGATTGGTGGCCTCCTCAGAAATGTGACTATGGAAAATGTAGTTGGGGGCATGCTTCTCTGCTTAATCTGGACCTCAACAACAAAATTTTGTTAAATGCAGTAAAAGCCTTTTCATCCCTGAAAATTAGAGTAGGTGGCACTTTGCAAGACAAGGTCATATACGGAACTGAAGATAATCGAGAACCCTGTACTCCTTTTGTTTTGAATGCTAATGAAATGTTTGGTTTCACTCGAGGGTGCTTACCGATGAACAGGTGGGATGAGCTAAACCGCTTTTTCCAGAAAGCAGGGGCTAAGGTTATCTTTGGATTAAATGAGCTTGCTGGAAAATCTATAAAGTCTGGTTTTGCTGTCGGACCTTGGAACTACACCAATGCTGAATCTTTAATACGATACACTGTCAGAAAGAAGTACCACATTCATGGTTGGGAACTTGGGAATGAATTGTGTGGACATGGAATTGGGGTAAGTGTTGCAGCAGATCAATATGCTTCTGATGTAGCTGCTCTAAGAAATATAGTTCAAAATGAATATAGAGGGATTGAACCAAAGCCACTAGTTATTGCTCCTGGAGGCTTCTTTGACGCAGATTGGTTTAAGGAATTTATAAGCAAGTCTGGTAAATCTGCAGATGTGGTCACCCACCACATTTATAATCTTGGGCCAGGAGTTGATGACCACTTAATTGATAGCATTCTTAACCCTTCCCATCTGGATGGAGAGGCTGACACATTCAGAAGTCTCAAAGGTATACTTCAAAATTCAACAAACAAGGTAAAATCATGGGTTGGTGAGGCAGGAGGGGCCTATAATAGTGGCCATCATCTTGTGTCTGATGCATTTGTCTTCAGTTTCTGGTATTTAGACCAGCTTGGCATGTCAGCTGTTTATGGCACCAAAACATACTGCAGACAAAGTTTGATAGGAGGAAACTATGGTTTACTGAATACAAGTACTTTCATGCCAAATCCAGACTATTATAGTGCACTTCTTTGGCACCGACTCATGGGAAGGCGTGTCCTTTTTACCACCTTCTATGGTACAAAGAAGATAAGAACTTATGCACACTGTGCAAAGGAATCCAAAGGGGTGACAATACTAGTGCTCAACTTGGACAACAGCACCACAGTTGAAGTGAACGTGGACTTAAAATTTAACAAGTTACCTCACAGTGGAGTGCATGAACCAGCCAGAAGAGAGTACCATTTAACAGCACCAGAGAGGAATTTACATAGCCAAATCATGTTGCTAAATGGAAAAATTTTACATGTAAACTCAGCTGGTGAAATTCCTCCTTTGGAGCCTATATATGTAGACTCATCAAAGCCAATAACAGTTGGCCCTCTATCTATTGTATTTGCTCATATACCAAACGTTATTCTTGCAGCATGCAGCTAG 1575 0.4108 MGCQIRLLGLCLWMYLASLSFISVGSMCARVGEVEKGIVLVHGKCAIGSIDDDFVCATLDWWPPQKCDYGKCSWGHASLLNLDLNNKILLNAVKAFSSLKIRVGGTLQDKVIYGTEDNREPCTPFVLNANEMFGFTRGCLPMNRWDELNRFFQKAGAKVIFGLNELAGKSIKSGFAVGPWNYTNAESLIRYTVRKKYHIHGWELGNELCGHGIGVSVAADQYASDVAALRNIVQNEYRGIEPKPLVIAPGGFFDADWFKEFISKSGKSADVVTHHIYNLGPGVDDHLIDSILNPSHLDGEADTFRSLKGILQNSTNKVKSWVGEAGGAYNSGHHLVSDAFVFSFWYLDQLGMSAVYGTKTYCRQSLIGGNYGLLNTSTFMPNPDYYSALLWHRLMGRRVLFTTFYGTKKIRTYAHCAKESKGVTILVLNLDNSTTVEVNVDLKFNKLPHSGVHEPARREYHLTAPERNLHSQIMLLNGKILHVNSAGEIPPLEPIYVDSSKPITVGPLSIVFAHIPNVILAACS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01098 524 PANTHER HEPARANASE-RELATED 27 523 - -
Vimu7g01098 524 Gene3D Glycosidases 72 393 - -
Vimu7g01098 524 Pfam Glycosyl hydrolase family 79, N-terminal domain 38 351 IPR005199 GO:0016020|GO:0016798
Vimu7g01098 524 SUPERFAMILY (Trans)glycosidases 50 395 IPR017853 -
Vimu7g01098 524 FunFam heparanase-like protein 3 74 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01098 Vimu-Chr7 10818372 10821289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01098 34 524 Glycoside Hydrolase AT5G61250 46.512 3.07e-168 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01098 K07964 - gmx:100778008 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01098 7 10818372 10821289 Vimu7g01098 7 10818372 10821289 ECH
Vimu7g01098 7 10818372 10821289 Vimu10g00671 10 5747018 5750617 PCT