Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00671 ATGGGTTCTCGGATTCAGCTTCTGGGTCTCTGCTTATGGTTTCACTTTGCATGCTCAAGCTTCATTTTTGGTTCCAGAGTGGCAGTAGGAGGAGATGCAACTGTGAAAGGGACTGTTGCCATTGATGACAAAGCTGTGATTGGAACTATTGATGATGATTTTGTCTGTGCAACTTTGGATTGGTGGCCTCCTGATAAATGTGACTATGGGAGATGCAGTTGGGGTCTTGCTTCTCTTCTCAATCTGGACCTCAACAACAAGATTTTTCTTAATGCAGTGAAAGCCTTTTCACCTTTGAAACTCAGATTAGGTGGAAGTTTGCAAGATAAGTTAATATATGGCACTGAAGATTACCACCAACCTTGTACTCCTTTTGTTAAGGACGCTTCTGAGATGTTTGGTTTCACGCAAGGGGCTAAGATCATTTTTGGATTAAATGCTCTTGCTGGAAAAACAATTCACGGTAATTCTGCAACAGGACCTTGGAATTCTACCAATGCTGAGTCCTTTATCAGATACAATGTTAGAAATGGCTACACCATTCATGGATGGGAACTTGGCAATGAATTGAGTGGGAGTGGAGTTGGAACAAGCATTACAGCAGACCAATATGCTTCTGATTTTGCTGCTTTACGAGACATAGTTTACAATGCATATGCAGATATTGATTCTAAGCCACTCGTCATTGCACCTGGAGGGTTCTTTGATGCAACCTGGTTCAGGGAATTTATAAGCAAATCTGGAAAAGCTTTGGATGTGGTCACCCACCACATTTATAACCTTGGACCAGGAGTTGATGAACACCTTGTGGAAAAAATTCTGGACCCTTCCTTTCTTGATAAGGAGGCTAGCACATTCAGTGGCCTCAAAAATATACTTGCAAGTACAGGTACCTCAGCTACAGCATGGGTTGGTGAGTCAGGAGGGGCCTACAATAGCGGTCATCATCTTGTATCAGATGCTTTTGTTTATAGTTTCTGGTATTTGGATCAGCTTGGCATGTCAGCTGCTTATGACACTAAAACATATTGCAGACAGAGTTTGATAGGAGGAAACTATGGTTTACTCAATACAACCAATTTCCTGCCAAATCCAGACTTCTATAGTGCTCTTCTTTGGCATAGACTCATGGGAAGACATGTACTGTCAACTACCTTCTCTGGGACAAAAAAGATAAGAGCTTATGCACACTGTGCAAAGCAATCCAAGGGAATCACAGTCCTGTTGATCAACCTAGACGGCAACACAAGTGTTGAAGCTGATGTAACCTTCGACAACAATGCAAAGAGTTTGAGGCTGAGAAAGATGTCCAGTCATTCAAACATGATGGAACTGCCTTTTGCAAGTGAAGCTGCAAGAGAAGAGTACCATCTAACTCCACAGGATGGGAATATACATAGCCAAATCATGGTACTAAATGGGAAACCTCTAAGGGTAAGCTCAGCTGGTGAAATTCCTCCTTTGGATCCTATATATGTGAACTCATCAGAACCAATAAGTGTTGCTCCTTTCTCTATTGTATTTGCCCATTTACCTGATGCTGTTGTTACTGCTTGCGGCTAG 1563 0.421 MGSRIQLLGLCLWFHFACSSFIFGSRVAVGGDATVKGTVAIDDKAVIGTIDDDFVCATLDWWPPDKCDYGRCSWGLASLLNLDLNNKIFLNAVKAFSPLKLRLGGSLQDKLIYGTEDYHQPCTPFVKDASEMFGFTQGAKIIFGLNALAGKTIHGNSATGPWNSTNAESFIRYNVRNGYTIHGWELGNELSGSGVGTSITADQYASDFAALRDIVYNAYADIDSKPLVIAPGGFFDATWFREFISKSGKALDVVTHHIYNLGPGVDEHLVEKILDPSFLDKEASTFSGLKNILASTGTSATAWVGESGGAYNSGHHLVSDAFVYSFWYLDQLGMSAAYDTKTYCRQSLIGGNYGLLNTTNFLPNPDFYSALLWHRLMGRHVLSTTFSGTKKIRAYAHCAKQSKGITVLLINLDGNTSVEADVTFDNNAKSLRLRKMSSHSNMMELPFASEAAREEYHLTPQDGNIHSQIMVLNGKPLRVSSAGEIPPLDPIYVNSSEPISVAPFSIVFAHLPDAVVTACG 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00671 520 Gene3D Glycosidases 73 375 - -
Vimu10g00671 520 FunFam heparanase-like protein 3 74 375 - -
Vimu10g00671 520 SUPERFAMILY (Trans)glycosidases 50 377 IPR017853 -
Vimu10g00671 520 PANTHER HEPARANASE-RELATED 33 519 - -
Vimu10g00671 520 Pfam Glycosyl hydrolase family 79, N-terminal domain 37 333 IPR005199 GO:0016020|GO:0016798
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00671 Vimu-Chr10 5747018 5750617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00671 36 519 Glycoside Hydrolase AT5G07830 45.841 2.61e-164 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00671 K07964 - gmx:100791916 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00671 10 5747018 5750617 Vimu10g00671 10 5747018 5750617 ECH
Vimu7g01098 7 10818372 10821289 Vimu10g00671 10 5747018 5750617 PCT