Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01073 ATGTCGGGTGGCACGCAGAAGAGTCTGAGAAAGGCACTTGGAGCACTTAAGGACACCACAACAGTCTCATTGGCTAAGGTCAACAGTGATTACAAGGAATTGGACATTTCTATAGTGAGAGCCACAAACCATGTTGAACGTCCAGCGAAGGAAAAACACATAAGAGCTATTTTTGCAGCTATCTCAGCTACAAGACCTAGAGCCGATGTTGCCTATTGCATCCATGCTCTTGCCCGGCGGTTATCAAAGACACATAACTGGGCAGTTGCTTTGAAAACTTTAATTGTTATTCACCGTGCTCTAAGGGAAGTGGATCCTACATTTCATGAAGAACTCATTAATTATGGGAGAAGTAGAAGTCATATGCTCAATATGGCTCATTTTAAAGATGATTCCAGTCCAAATGCATGGGATTATTCTGCATGGGTGCGCACTTATGCATTATTTTTGGAGGAGAGGCTGGAATGTTTTCGTGTGTTGAAGTATGACATCGAGGCAGATCGCCCTAGGACCAAAGATTTGGATACTGCAGAACTATTAGAGCAGTTGCCAGCTTTACAACAACTTCTTAATCGAGTTATTGGCTGCCAGCCACACGGAGCAGCTGTAAATAACTTTGTCATTCAGTTAGCACTCTCAATGGTTGCTTCAGAAAGCATTAAAATTTATCAAGCTATTAGTGATGGCACAGTCAATATGGTTGACAAGTTTTTTGAGATGCAACGCCATGATGCTCTGAAAGCTCTTGATATATACAGGAGGGTTGGGCAGCAGGCTGAGAGACTGTCAGAATTTTATGAAATATGCCGTAATCTTGATGTTGGCCGTGGAGAGAAGTTTATTAAAGTCGAACAGCCCCCTTCATCATTTCTGCAAGCTATGGAAGAGTACGTCAAAGATGCTCCCCAGGGACCTATAGTTCGTAAGGATCAGTTTATTGAAAACAAAGAAGTTTTAGCTATTGAAGATAAAAAGACAACAGAAGTGCAGGAGGAACGTCCACCCTCACCTTCACCCTCACCTCCTCCACCTCCTCCTGCTGAACCTGTGAAAGTGGAAGAACCACCAGTGCAACCACCACCTGATCTATTGAATTTGGAGGATCCGGTTCCAGCTGCTTTAGAGTTGGAAGAGAAAAATGCATTGGCTTTAGCCATTGTTCCCATTGCCGTTGAACAACAGCCTTCTGCTGTTTCAAATCCAACAAATGGAACTACAGGATGGGAATTGGCACTTGTTACTGCTCCTAGTTCAAATGAGAGTGCTGCGGCAGCTAGCAAACTGGCTGGAGGTTTGGACAAGCTTACTTTAGACAGTCTTTACGATGATGCACTCAGGAGAAACAACCAAAATGTCAGCTATAATCCATGGGAGTCAGCACCGGTGGGAAACACAATGCAACCAACAATGCATGATCCATTTTTTGCATCTAATGCAGTTGCTGCTCCACATTCTGTTCAGATGGCTGCTATGTCCAACCAGCAGCAAGCTTTCACGTATCAGCAGCAGCAGCAAATGATGATGATGGCCCCTCAGCAACAATCAGTAAATCCTTTCGGAAATCCTTATGGAGCCACTGTTCACCCCTATGGCTCAGGTATGCCTGTTCAATCATACAATCCATATACAGGTCTCATCTAG 1641 0.44 MSGGTQKSLRKALGALKDTTTVSLAKVNSDYKELDISIVRATNHVERPAKEKHIRAIFAAISATRPRADVAYCIHALARRLSKTHNWAVALKTLIVIHRALREVDPTFHEELINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRTYALFLEERLECFRVLKYDIEADRPRTKDLDTAELLEQLPALQQLLNRVIGCQPHGAAVNNFVIQLALSMVASESIKIYQAISDGTVNMVDKFFEMQRHDALKALDIYRRVGQQAERLSEFYEICRNLDVGRGEKFIKVEQPPSSFLQAMEEYVKDAPQGPIVRKDQFIENKEVLAIEDKKTTEVQEERPPSPSPSPPPPPPAEPVKVEEPPVQPPPDLLNLEDPVPAALELEEKNALALAIVPIAVEQQPSAVSNPTNGTTGWELALVTAPSSNESAAAASKLAGGLDKLTLDSLYDDALRRNNQNVSYNPWESAPVGNTMQPTMHDPFFASNAVAAPHSVQMAAMSNQQQAFTYQQQQQMMMMAPQQQSVNPFGNPYGATVHPYGSGMPVQSYNPYTGLI 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01073 546 Gene3D ANTH domain 165 319 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vimu7g01073 546 ProSiteProfiles ENTH domain profile. 26 164 IPR013809 -
Vimu7g01073 546 Pfam ANTH domain 33 300 IPR011417 GO:0005543
Vimu7g01073 546 PANTHER CLATHRIN ASSEMBLY PROTEIN 7 501 IPR045192 GO:0048268|GO:0072583
Vimu7g01073 546 SUPERFAMILY ENTH/VHS domain 33 165 IPR008942 -
Vimu7g01073 546 SUPERFAMILY GAT-like domain 169 300 - -
Vimu7g01073 546 FunFam putative clathrin assembly protein At5g35200 166 318 - -
Vimu7g01073 546 MobiDBLite consensus disorder prediction 334 366 - -
Vimu7g01073 546 FunFam Clathrin assembly protein AP180 8 164 - -
Vimu7g01073 546 MobiDBLite consensus disorder prediction 319 366 - -
Vimu7g01073 546 SMART enth_2 32 164 IPR013809 -
Vimu7g01073 546 CDD ANTH_N 34 157 - -
Vimu7g01073 546 Gene3D - 7 164 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01073 Vimu-Chr7 10549761 10554183 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01073 K20043 - gmx:100815239 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01073 7 10549761 10554183 Vimu7g01073 7 10549761 10554183 ECH
Vimu7g01073 7 10549761 10554183 Vimu10g00908 10 8102019 8105683 PCT