Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00854 ATGGAGGGCAGGAGTAAGAAGAAGAGTAAAGAAAGCAGTGCGAGCGGTCAACGGCGTGTGGGGTTACTATACGATAGGAGGATGTGCAAACACTACGCGCCGGACGAGCCGAAGCACGTCGAGAATCCTAATCGCATTAGGTCAATTTGGAACCGGCTCGAAGCCGCCGGCGTTCCTCAACGATGCGTGCTTCTAGAGGCCAAGAAAGCTGAAGACAGACATGTGCGGTTAGTTCATTCCAGACATCATGTGAACCTGATTAAGAACATTAGCGCCAGGGCGTTCAAATCGCGGAGGTCTCAGATTGCCTCCGAATTGAATTCCGTATATTTTAATGAAGGTTCATCTGAAGCTGCGTTTCTTGCTGCTGGCTCTGCTATAGAGGTTGTTGAAAAAGTGGCAAGTGGGGAATTAGATTCAGCTGTTGCCATTGTGAGGCCCCCAGGTCATCATGCAGAACATAATGAAGCTATGGGATTTTGTCTCTTCAACAATGTGGCAGTTGCTGCAAGATATCTCTTAGACGAAAGACCTGATTTAGGTGTGAAGAAAATTTTAATTGTTGATTGGGATGTCCATCATGGAAATGTTTTACTGGTTGTTGATCTTGTAATTGTTCTTAGTACATCAGGGAAGATCATTTACCTTCTTTTACTAGTTTTTGGACCTCTGACGAGGACTATTGCTTTAAGGACTTCAGATGAACTTTGTATCAATTTCATAGTTTATCCTCAATCAACTAAACTTTTCTATTCATACAGGCATGACTTTGGGTTTTTTTATCCTGCTGAGATCGACGGGTTTTATGATCAGGTGGGAGAAGGAGAAGGTGCTGGATATAATATAAATGTCCCCTGGGAGCAAGGGAAATGTGGTGATCCAGATTACATTGCAGTGTGGGAACACATCTTGCTTCCTGTTGCCAAAGAATTTAATCCAGACATAGTATGTTATTGTGACGTTTGGGTTTTTCTGTTATCTGTGTGGGAGGAGAGGGTATCACTAGTTCTTCCCATGGCTTTGGTTGGAGCATTGCTAGCTAGCTTTTCTGTCCGTGACCCTCTAGGAGGATGTCGTGTCACAGCAGTTGGTTATTCTGTTCTGTTGGAGAAGTTGATGGATTTTGCTAAAGGTAGGATTGTACTGATTTTAGAAGGGGGGTATCATCTTGATTCCATTGCAAAATCAATGCATGCTTGCTTGGAAGTTTTGCTAACTGGCAAGTCTGTTACCGAATCCTCAGAGGCCTATCCATTTCAGTCTACATGGAATGTGATTCAAGCGGTTCGCGAGATGTTAAGCCCATTTTGGCCTACACTTGCACCTAAACTACCACAAGAGTTAGTCTCGCAATTTCCATTACTGTTTTCATGGAGTTGGGATGTGAGAATTGAGCTGAATGCTCAACTAGTTTCTCTCAATGGTTCACAAAATAATCAGATGATTTGGCATACTCTGATTTCAAGCTCGGACTCTGAAGATGAGGATGATAAAGGTGCACCAAGTTCAGGAAATCTTGGAGAACTTATTGAGGATGTCTTAAAACCACTTTCCAAACTGAAAGTGGATGCTGATGAGGAGATTCGTGTTTCTAGTACTTGGCGATCTGCATTGTCAAATGTTTATATATGGTATGCCTCCTATGGATCAAATATGTGGAAAGCAAGATTTAATTGCTACCTAGAAGGTGGACAGGTGGATGGTATGGTGAAGCAGTGTTCTGGTTCAGTGAACAGAACTCTGCCAAAGGAGATCACGTGGAAGACTTTCCCTTGTGATATATTCTTTGGTCGAGATTCATCGCATTCATGGGGACTGGGAGGCATAGTCTGTCTCTTTCAAAGCTTTCCTGTTAGAGGTGACATTGTTGAATCATTTCTTGGGGGTTTTCTTATGTATCCAATGGAGGCCTTGACTTTAGATTCGGGTTCACATTTGTTACAGGCTAGAGCAGAGAACATTTTAAGCCTTGATGCGGGCTCTCCTTTATTTGATATAACTACCTTGAATGCTATCTCTGACAAGGAGTTCAACTCCCTGGAGGTTGTCAAGGGTGCTTGGTATGGTAATGTTGTCTACTTAGGAAAGGAGCAAGATATTCCTGTGATTACCACGACGTCTTTTAGCATTGACATTTATGATACTTTATCCAGGTCTTCGCTTATTGATATGGAACGTTTCAAATCTGGGAAGCTACCATTACGTGCCCCTAATAAAGCGTATGCCAACTCCTTCATTAAAGGGTTGGTAGAGGGAGAACAACTTTCGGAGGCGGAGGCCATTGCTTATATAGAAGGTGCTGCTAAATCGTTTTGA 2316 0.4288 MEGRSKKKSKESSASGQRRVGLLYDRRMCKHYAPDEPKHVENPNRIRSIWNRLEAAGVPQRCVLLEAKKAEDRHVRLVHSRHHVNLIKNISARAFKSRRSQIASELNSVYFNEGSSEAAFLAAGSAIEVVEKVASGELDSAVAIVRPPGHHAEHNEAMGFCLFNNVAVAARYLLDERPDLGVKKILIVDWDVHHGNVLLVVDLVIVLSTSGKIIYLLLLVFGPLTRTIALRTSDELCINFIVYPQSTKLFYSYRHDFGFFYPAEIDGFYDQVGEGEGAGYNINVPWEQGKCGDPDYIAVWEHILLPVAKEFNPDIVCYCDVWVFLLSVWEERVSLVLPMALVGALLASFSVRDPLGGCRVTAVGYSVLLEKLMDFAKGRIVLILEGGYHLDSIAKSMHACLEVLLTGKSVTESSEAYPFQSTWNVIQAVREMLSPFWPTLAPKLPQELVSQFPLLFSWSWDVRIELNAQLVSLNGSQNNQMIWHTLISSSDSEDEDDKGAPSSGNLGELIEDVLKPLSKLKVDADEEIRVSSTWRSALSNVYIWYASYGSNMWKARFNCYLEGGQVDGMVKQCSGSVNRTLPKEITWKTFPCDIFFGRDSSHSWGLGGIVCLFQSFPVRGDIVESFLGGFLMYPMEALTLDSGSHLLQARAENILSLDAGSPLFDITTLNAISDKEFNSLEVVKGAWYGNVVYLGKEQDIPVITTTSFSIDIYDTLSRSSLIDMERFKSGKLPLRAPNKAYANSFIKGLVEGEQLSEAEAIAYIEGAAKSF 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00854 771 Pfam Histone deacetylase domain 39 317 IPR023801 -
Vimu7g00854 771 Pfam Histone deacetylase domain 352 403 IPR023801 -
Vimu7g00854 771 PANTHER HISTONE DEACETYLASE 9-RELATED 352 450 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
Vimu7g00854 771 Gene3D Histone deacetylase domain 13 320 IPR037138 -
Vimu7g00854 771 SUPERFAMILY Arginase/deacetylase 18 438 IPR023696 -
Vimu7g00854 771 Gene3D Histone deacetylase domain 347 443 IPR037138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00854 Vimu-Chr7 8390912 8396104 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00854 K11406 - gmx:100788831 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00854 7 8390912 8396104 Vimu7g00854 7 8390912 8396104 ECH
Vimu7g00854 7 8390912 8396104 Vimu10g01051 10 9796803 9800688 PCT