Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00701 ATGGCTGCAACAGCTTCGAGGTTCATCAAGTGTGTCACAGTTGGGGATGGAGCTGTGGGCAAAACTAGCATGCTCATTTGCTATACAAGCAACAAATTCCCCACGGACTATGTTCCTACAGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAGGCACAACTGTCAATTTAGGCCTCTGGGATACTGCAGGTCAAGAGGATTACAACAGGCTGAGGCCTTTGAGCTACAGGGGGGCAGATGTCTTTGTCCTGGCTTTCTCTTTAGTTAGTCATGCAAGCTACGAAAATGTGTTGAAGAAGTGGGTTCCTGAACTGCAGCATTTTGCTCCTGGCATCCCAGTGGTGCTAGTTGGCACCAAATTGGATCTCCGAGAAGATAAGCACTATTTGGCTGAGCATCCTGGCCTGGTTGCTGTGACTTCTGAGCAAGGTGAGGAATTGCGTAAACTAGTAGGAGCAACATATTATATTGAGTGCAGCTCAAAAACTCAGCAGAACGTGAAGTCAGTTTTTGATGCAGCTATCAAGGTGGTCATCAAGCCTCCACAAAAAGAAGAGAAAAAGAAAAAACCACGTCGAGGGTGTCTTCTGTTAGTAGACTTTTTTCATATCATAATAACTCCTGCACGTCAAACTTTCTTGCTTGTGAAAAGGGATATAGATCATTAA 672 0.442 MAATASRFIKCVTVGDGAVGKTSMLICYTSNKFPTDYVPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSHASYENVLKKWVPELQHFAPGIPVVLVGTKLDLREDKHYLAEHPGLVAVTSEQGEELRKLVGATYYIECSSKTQQNVKSVFDAAIKVVIKPPQKEEKKKKPRRGCLLLVDFFHIIITPARQTFLLVKRDIDH 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00701 223 ProSiteProfiles small GTPase Ras family profile. 4 198 IPR001806 GO:0003924|GO:0005525
Vimu7g00701 223 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Vimu7g00701 223 CDD Rop_like 8 180 - -
Vimu7g00701 223 ProSiteProfiles small GTPase Rab1 family profile. 4 223 - -
Vimu7g00701 223 PRINTS Transforming protein P21 ras signature 9 30 - -
Vimu7g00701 223 PRINTS Transforming protein P21 ras signature 32 48 - -
Vimu7g00701 223 PRINTS Transforming protein P21 ras signature 49 71 - -
Vimu7g00701 223 PRINTS Transforming protein P21 ras signature 111 124 - -
Vimu7g00701 223 PRINTS Transforming protein P21 ras signature 157 179 - -
Vimu7g00701 223 Pfam Ras family 10 179 IPR001806 GO:0003924|GO:0005525
Vimu7g00701 223 FunFam Rac-like GTP-binding protein 3 2 199 - -
Vimu7g00701 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Vimu7g00701 223 PANTHER RHO FAMILY GTPASE 6 197 IPR003578 GO:0005525|GO:0007264
Vimu7g00701 223 SMART ras_sub_4 6 182 - -
Vimu7g00701 223 Gene3D - 2 199 IPR027417 -
Vimu7g00701 223 SMART rab_sub_5 9 182 - -
Vimu7g00701 223 NCBIfam small GTP-binding protein domain 9 173 IPR005225 GO:0005525
Vimu7g00701 223 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00701 Vimu-Chr7 7001316 7003600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00701 9 193 EF-hand Containing Proteins AT5G27540 25.926 1.41e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00701 K04392 - gmx:100791566 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00701 7 7001316 7003600 Vimu7g00701 7 7001316 7003600 ECH
Vimu7g00701 7 7001316 7003600 Vimu10g01175 10 11484518 11488443 PCT