Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01175 ATGGCTGCTATTGCCCCAAGATTCATCAAGTGTGTGACCGTTGGAGACGGAGCTGTAGGGAAGACCTGCATGCTCATTTGCTACACCAGCAACAAATTCCCCACGGACTATATTCCCACTGTGTTTGATAATTTCAGTGCCAATGTAGTTGTTGAAGGCGTAACTGTCAATTTAGGCCTTTGGGATACAGCTGGGCAAGAGGATTACAACAGGCTGAGGCCATTGAGCTACAGGGGGGCAGATGTCTTTGTCTTGGCTTTTTCTTTAGTTAGTCGAGCAAGCTATGAGAATGTGCTGAAGAAGTGGATCCCTGAACTCCAGCATTTTGCCCCTGGCATCCCATTGGTATTGGTTGGTACCAAATTGGATCTCCGGGAAGACAAGCACTATATGGCTGATCATCCAGGTTTGATGCCCGTGACTACTGAGCAAGGTGAGGAACTCCGTAAACAGATTGGAGCAACCTATTATATCGAATGCAGCTCAAAAACTCAGCAGAATGTGAAGGGAGTTTTTGATGCTGCAATAAGAATGGTGATCAAGCCTCCACAAAAGCAAAACGAGAAGAGGAAGAAAAAACCACGAGGCTGTTTCCTGGTAGGTTTTAATGTACTGAGGAAATATGAAACAGTTGCACCATAA 642 0.4548 MAAIAPRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGVTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHFAPGIPLVLVGTKLDLREDKHYMADHPGLMPVTTEQGEELRKQIGATYYIECSSKTQQNVKGVFDAAIRMVIKPPQKQNEKRKKKPRGCFLVGFNVLRKYETVAP 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01175 213 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Vimu10g01175 213 ProSiteProfiles small GTPase Rab1 family profile. 4 213 - -
Vimu10g01175 213 SMART rab_sub_5 9 182 - -
Vimu10g01175 213 Gene3D - 5 200 IPR027417 -
Vimu10g01175 213 NCBIfam small GTP-binding protein domain 9 173 IPR005225 GO:0005525
Vimu10g01175 213 Pfam Ras family 10 180 IPR001806 GO:0003924|GO:0005525
Vimu10g01175 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Vimu10g01175 213 CDD Rop_like 8 180 - -
Vimu10g01175 213 PANTHER RHO FAMILY GTPASE 7 198 IPR003578 GO:0005525|GO:0007264
Vimu10g01175 213 ProSiteProfiles small GTPase Ras family profile. 1 205 IPR001806 GO:0003924|GO:0005525
Vimu10g01175 213 FunFam Rac-like GTP-binding protein 3 2 200 - -
Vimu10g01175 213 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Vimu10g01175 213 SMART ras_sub_4 6 182 - -
Vimu10g01175 213 PRINTS Transforming protein P21 ras signature 111 124 - -
Vimu10g01175 213 PRINTS Transforming protein P21 ras signature 9 30 - -
Vimu10g01175 213 PRINTS Transforming protein P21 ras signature 157 179 - -
Vimu10g01175 213 PRINTS Transforming protein P21 ras signature 32 48 - -
Vimu10g01175 213 PRINTS Transforming protein P21 ras signature 49 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01175 Vimu-Chr10 11484518 11488443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01175 5 195 EF-hand Containing Proteins AT5G27540 24.352 2.30e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01175 K04392 - gmx:100499774 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01175 10 11484518 11488443 Vimu10g01175 10 11484518 11488443 ECH
Vimu7g00701 7 7001316 7003600 Vimu10g01175 10 11484518 11488443 PCT