Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00676 ATGACAGTTACGGTTGCGCGCGTGATTCTGGTTCTTAAGGAATCAAATATGGGAGTTAACGATGAAAGGGGAGTAAATGTAATGAATAGGTTTGGTTACACTTCACCCTTTAACGGAACCTCAACTCCAAGGAGTTCCTTGAGCCAACAAAGACGCCAAAGTATTGGTCCAACTTTCAATGTTGAGAGGGTGGTTGACAGTCCCACAATTCAACGGCTTCATGGAAATGCTTGTGACATGCAGAGCTCTGATCAATCATCCTCAAGGCGATTTTTTGGATACAATGGCAGTGAGTCTATATCCTATTCAAAATTGTTCTATCTATTTGGAGGGCAGAAGGGAGAGGTGGAGATACTGAAAGATAAAGTGGAGGAAAAGAAACAAGGGAATTCTAGCAGCGAAGCTCCTTCCACAATGAGTAGTTCGTCCAATGATAAGAAGCTAGACAAGGTGGCTGAGACTCAAACAAGAACTTTAAGCTGTGTTGTTTCACAAAAACCAAAGAAAGTATCACAATCACAATTCTTCCCAGAAACCCCATCAAAGTCAAGATCACCAATAGCAAAAAGCCCTACTGCAAAACCTCCTATTGATAGGAAGAATGACAGCCCTTTGAGAAAACAGAACACAGGTGTTCACCGTGTGAGAAAAACTGCTGGTGGAAGATCACTGTCACAAGGTCAGATTGATATTTCCTCTGGAGCAGCATTGAATAAGACTGAACTGGGACAAGCTTTGCTAAACCAAGCAAGGGACATAATTTCATCTGGAAATAATCCGACCGGAGCTCTTGAATTAGCCCTTCAAGCAAAGAAATTGTTTGAGAGAACTGCTGCTTATGGGAGACCAAATTTGGATATGGCCATGTGTTTACATGTTACTGCAGTAATACATTGCACTTTGGGCAATTTCAATGAAGCAATTTCGCTAGTGGAGCGCTCAATAGAGATTCCTGTTATTGAGGAAGGCCAACAGCACGCCATTGCTAAATTTGCTGGCCACATGCATCTAGGAGACATTTATGCTATGTCGGGCCAGCTGGAGAAGTCAATTAAGTGCTACACCGAAGGGTTAGAATTGCAAAGGAAGGTTTTGGGAGAAACAGACCCTAGAGTTGGCGAAACGTGTAGGTATGTGGCTGAGGCTAACTTTCAAGCCTTGCAATTTGAGGAGGCGGAGAGGATGTGCCAAATTGCCCTTGATATCCACAGAGCAAATGGTTCACCCTCATCTCTTGAAGAGGCAGCCGATAGGAGGCTGATGGGACTTATATGTGAAGCAGATGGTAAACACGAAGCAGCCCTGGAGCATCTTGTGTTGGCCAGCATGGCAATGGTAGCAAATGGCCAAGAAGTGGAAGTGGCATTTGTTGACTGCAACATTGGAGACACGTATTTATCATTGGCTAGATATGATGAGGCCATCTTTGCATATCAGAGAGCATTGAAAGTTTTCAAGATCCACAAAGGTGAGAACCATCCTGCTGTGGGGTCAGTTTTTGTACGTCTGGCTGACTTGTATAGCAGAACATGGAAGATTAGAGAGTCAAAATTATACTGTGAGGAGGCACTTAAAATCTATGAGAATCCCATGCCTGGGGTCCCTCCAGAGGAGACTGCTAACGGTTTTATGAATGTATCAGCCATCTACGAGTCGATGAATGAGCTAGAAGAGGCACTTAAATTACTTCACAAGGCACTAACCATACTAAATGATGTCTCTGGTCAGATAAACACCATAGCAGGAATTGAAGCTCAGATGGGGGTCATGTACTTTGTGTTGAAGAACTACACTGAATCTTATAACTGTCTCAAGAATGCCGTGTCCAAGCTTCGTGCTACTGGAGGAAAGAAATCAGCCTTCTTTGGTACTGTTCTTAATCAAATGGGACTTGCTTGTGTGCAACTCCATTCCCTGAATGAGGCTGCAGCATTATTTGAAGAAGCAAGGGCCATTTTGGAACAAGAGAATGGACTCTATCACACTGAAACACTTGGAGTATGTGGCAATCTTGCTGGAACATATGATGCAATTGGAAGGCTGGATGAGGCAATTGAAATTCTTGAAAACATTGTGGTAATGAGGGAAGAAAAGCTTGGGACTGCAAATCCTGATGTTGCTGATGAGAAGAGAAGGTTGGAGGAGTTGTTGAAGGAAACAGGGAAAGTTCGGAACAGAAAAACCAAGTCACTGGAGAACCTTTTTGATCATGATTATATATGA 2223 0.4318 MTVTVARVILVLKESNMGVNDERGVNVMNRFGYTSPFNGTSTPRSSLSQQRRQSIGPTFNVERVVDSPTIQRLHGNACDMQSSDQSSSRRFFGYNGSESISYSKLFYLFGGQKGEVEILKDKVEEKKQGNSSSEAPSTMSSSSNDKKLDKVAETQTRTLSCVVSQKPKKVSQSQFFPETPSKSRSPIAKSPTAKPPIDRKNDSPLRKQNTGVHRVRKTAGGRSLSQGQIDISSGAALNKTELGQALLNQARDIISSGNNPTGALELALQAKKLFERTAAYGRPNLDMAMCLHVTAVIHCTLGNFNEAISLVERSIEIPVIEEGQQHAIAKFAGHMHLGDIYAMSGQLEKSIKCYTEGLELQRKVLGETDPRVGETCRYVAEANFQALQFEEAERMCQIALDIHRANGSPSSLEEAADRRLMGLICEADGKHEAALEHLVLASMAMVANGQEVEVAFVDCNIGDTYLSLARYDEAIFAYQRALKVFKIHKGENHPAVGSVFVRLADLYSRTWKIRESKLYCEEALKIYENPMPGVPPEETANGFMNVSAIYESMNELEEALKLLHKALTILNDVSGQINTIAGIEAQMGVMYFVLKNYTESYNCLKNAVSKLRATGGKKSAFFGTVLNQMGLACVQLHSLNEAAALFEEARAILEQENGLYHTETLGVCGNLAGTYDAIGRLDEAIEILENIVVMREEKLGTANPDVADEKRRLEELLKETGKVRNRKTKSLENLFDHDYI 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00676 740 Coils Coil 636 656 - -
Vimu7g00676 740 Pfam MalT-like TPR region 291 455 IPR041617 -
Vimu7g00676 740 Gene3D Tetratricopeptide repeat domain 613 719 IPR011990 GO:0005515
Vimu7g00676 740 ProSiteProfiles TPR repeat profile. 455 488 IPR019734 GO:0005515
Vimu7g00676 740 MobiDBLite consensus disorder prediction 123 153 - -
Vimu7g00676 740 Gene3D Tetratricopeptide repeat domain 224 442 IPR011990 GO:0005515
Vimu7g00676 740 Coils Coil 553 573 - -
Vimu7g00676 740 Pfam Tetratricopeptide repeat 624 689 - -
Vimu7g00676 740 Pfam Tetratricopeptide repeat 457 529 - -
Vimu7g00676 740 SUPERFAMILY TPR-like 334 529 IPR011990 GO:0005515
Vimu7g00676 740 MobiDBLite consensus disorder prediction 170 227 - -
Vimu7g00676 740 SMART tpr_5 623 656 IPR019734 GO:0005515
Vimu7g00676 740 SMART tpr_5 665 698 IPR019734 GO:0005515
Vimu7g00676 740 SMART tpr_5 497 530 IPR019734 GO:0005515
Vimu7g00676 740 SMART tpr_5 331 364 IPR019734 GO:0005515
Vimu7g00676 740 SMART tpr_5 581 614 IPR019734 GO:0005515
Vimu7g00676 740 SMART tpr_5 455 488 IPR019734 GO:0005515
Vimu7g00676 740 SMART tpr_5 540 573 IPR019734 GO:0005515
Vimu7g00676 740 SMART tpr_5 373 406 IPR019734 GO:0005515
Vimu7g00676 740 SMART tpr_5 288 321 IPR019734 GO:0005515
Vimu7g00676 740 Coils Coil 706 726 - -
Vimu7g00676 740 Gene3D Tetratricopeptide repeat domain 443 612 IPR011990 GO:0005515
Vimu7g00676 740 SUPERFAMILY TPR-like 494 693 IPR011990 GO:0005515
Vimu7g00676 740 MobiDBLite consensus disorder prediction 130 145 - -
Vimu7g00676 740 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 61 737 - -
Vimu7g00676 740 Coils Coil 594 614 - -
Vimu7g00676 740 SUPERFAMILY TPR-like 258 360 IPR011990 GO:0005515
Vimu7g00676 740 MobiDBLite consensus disorder prediction 195 209 - -
Vimu7g00676 740 ProSiteProfiles TPR repeat profile. 540 573 IPR019734 GO:0005515
Vimu7g00676 740 MobiDBLite consensus disorder prediction 170 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00676 Vimu-Chr7 6735385 6738708 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00676 - - gmx:100813461 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00676 7 6735385 6738708 Vimu10g01220 10 12125498 12129865 ECH
Vimu7g00676 7 6735385 6738708 Vimu7g00676 7 6735385 6738708 ECH
Vimu7g00676 7 6735385 6738708 Vimu10g01220 10 12125498 12129865 PCT