Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01220 ATGGAAGAGTTGAAGATGACAGGAAATGTAACGAACGGTGTTCATGATGAAGGGGAAGGTAATGAGATGAATGTGAAACGTGATTCCCCTTCTAAGGAAACCTCGAGTCCGGTTAAGTCCCCCAGGGGCTCCTCGAGTCCGGGAAAAGTTGAAGGCGATACTGCTAATTTTGGTGTTGATGGGGTGGTTGAGCCCTCCATTGAACAGCTTTATGAGAATGTGTGTGACATGCAGAGTTCGGATCAGTCACCGTCACGGCAAAGTTTTGGATCTGATGGCGATGAGTCTAGAATCGATTCGGAATTGCGCCATCTAGTTGGAGGACGGATGAGGGAGGTAGAGATAATGGAAGAGGAAGTTGGGGAGGAGAAAGGGCAAGAAAGGAGTTCAAGTAGTGAAATATCTTCCGGATTGGATGGCTTGACCACTGATAAGAAATTGGATCAGGTGAATGAGATTCAGGAGGTTCAGCCTGCAGCTACTACTAGTTCTGGTTCCTCAGTAAAGTCCGTTAAGGCATCGAGTTCACGGATGGGACCTGATACGTCGCCCAAATCAACAGCCAAGGGAAAAAGTCCTGCCCCAAAACCTCCTATGCAAAGAAAGAGTGATAGACCTTCGAGGAAACAAAGTAGTGGTGTTACTGGCGTGAAGAATTTGAAGAATTCTCCTTCGGGAAATAAGTCAGTGTCACAAAAACGTGTTGAGAAAAGGGCCGAGTCCGCATTGGACAGACCTGAGAGGGCACCGATATTACTAAAACAAGCAAGAGATATGATTTCATTCGGGGATAATCCTTATAAGGCTCTTGACTTAGCTCTTCAAGCAATGAAACTGTTTGAGAAGTTAGGTGATGAGAAACCGAGCTTAGAGCTGGTTATGTGTTTACATGTTATTTCAGCAATATATTGCAGCTTGGGTCAATATGGTGAGGCAATCCCAATTCTTGAGCGGTCAATTGAGATTCCTGTTATTGAGGAAAGTCAGGAACATGCCCTTGCTAAATTTGCTGGTCACATGCAACTGGGAGACACCTATGCTATGCTGGGCCAGCTTGAGAATTCAATTAAGTGCTATACCACAGGATTAGAAGTACAGAAGCAGATTTTGGGGGAGACAGACCCAAGAGTTGGTGAAACTTGTCGGTACGTGGCTGAAGCTAATGTTCAGGCTTTGCGATTTGATGAAGCAGAGAGGCTTTGTCAGATGGCTCTAGACATTCATAAAGCAAATAATCCAGCTCCATCTCTTGAAGAGGCAGCTGATAGGAGGCTCATGGGCCTTGTATGTGATACAAAGGGAAATCACGAAGCTGCTCTTGAGCATCTTGTTCTAGCCAGCATGGCAATGGTCGCTAATGGCCAAGAAGGGGATGTGGCTTCTGTTGATTGCAGCATTGGAGATGCATACTTGTCTTTGTCTAGATATGATGAAGCTATCTTTGCGTATCAGAAAGCATTAACAGCTTTCAAGACCAACAAAGGAGAGAATCATCCAACAGTGGGATTTGTCTTTGTGCGTCTGGCTGACTTGTATAACAGGATAGGAAAGATAAGGGAATCAAAATCGTATTGTGAGAGTGCACTTAAAATATACGAGAATCCCATTCCTGGAGTTCCTCTAGAGGAGATTGCTAGTGGTCTTACAAATATTTCAACTATCTATGAGTCTATGAATGAACTTGAACGGGCTCTCAAGTTACTGCAGAAAGCACTGGAGATATACAATGATGTCCCTGGTCAGCAGAGCACAATAGCTGGAATTGAAGCTCAGATAGGAGTCATGTACTACATGTTGGGGAACTTTTCTGAATCTTACGAAACTTTGAAGACTGCTATTTTAAAACTTCGTGCTATTGGAGAAAAGAAATCATCTTTCTTTGGTATTGCTCTTAATCAAATGGGACTTGCCTGTGTCCAACGGTATGCCTTAAGTGAGGCTACAGAATTATTTGAAGAAGCAAAGAGTATTTTGGAACAAGAATATGGTCCGTATCACCCAGAAACACTTGGGGTATGCAGTAATCTTGCTGGCACATACGATGCAATTGGCAGAATGGATGATGCAATTCAAATTCTGGAGTACGTTGTAAGCGCGAGGGAGGAAAAGCTTGGGACAGCAAATCCTGACGTGGATGATGAGAAGAAAAGGTTGGGTGAGTTGTTGAAGGAAGCAGGAAGAGTTCGGAGCAGAAAAAACAGATCACTTGAGAACCTTCTTGATGGCAATGCTCACACTGTAAACAATGTTGTCATCAGGGCCTGA 2265 0.4397 MEELKMTGNVTNGVHDEGEGNEMNVKRDSPSKETSSPVKSPRGSSSPGKVEGDTANFGVDGVVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELRHLVGGRMREVEIMEEEVGEEKGQERSSSSEISSGLDGLTTDKKLDQVNEIQEVQPAATTSSGSSVKSVKASSSRMGPDTSPKSTAKGKSPAPKPPMQRKSDRPSRKQSSGVTGVKNLKNSPSGNKSVSQKRVEKRAESALDRPERAPILLKQARDMISFGDNPYKALDLALQAMKLFEKLGDEKPSLELVMCLHVISAIYCSLGQYGEAIPILERSIEIPVIEESQEHALAKFAGHMQLGDTYAMLGQLENSIKCYTTGLEVQKQILGETDPRVGETCRYVAEANVQALRFDEAERLCQMALDIHKANNPAPSLEEAADRRLMGLVCDTKGNHEAALEHLVLASMAMVANGQEGDVASVDCSIGDAYLSLSRYDEAIFAYQKALTAFKTNKGENHPTVGFVFVRLADLYNRIGKIRESKSYCESALKIYENPIPGVPLEEIASGLTNISTIYESMNELERALKLLQKALEIYNDVPGQQSTIAGIEAQIGVMYYMLGNFSESYETLKTAILKLRAIGEKKSSFFGIALNQMGLACVQRYALSEATELFEEAKSILEQEYGPYHPETLGVCSNLAGTYDAIGRMDDAIQILEYVVSAREEKLGTANPDVDDEKKRLGELLKEAGRVRSRKNRSLENLLDGNAHTVNNVVIRA 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01220 754 Coils Coil 551 578 - -
Vimu10g01220 754 Gene3D Tetratricopeptide repeat domain 446 623 IPR011990 GO:0005515
Vimu10g01220 754 MobiDBLite consensus disorder prediction 1 246 - -
Vimu10g01220 754 MobiDBLite consensus disorder prediction 34 51 - -
Vimu10g01220 754 Pfam Tetratricopeptide repeat 340 367 IPR019734 GO:0005515
Vimu10g01220 754 MobiDBLite consensus disorder prediction 92 129 - -
Vimu10g01220 754 MobiDBLite consensus disorder prediction 231 246 - -
Vimu10g01220 754 MobiDBLite consensus disorder prediction 209 230 - -
Vimu10g01220 754 SMART tpr_5 545 578 IPR019734 GO:0005515
Vimu10g01220 754 SMART tpr_5 336 369 IPR019734 GO:0005515
Vimu10g01220 754 SMART tpr_5 586 619 IPR019734 GO:0005515
Vimu10g01220 754 SMART tpr_5 502 535 IPR019734 GO:0005515
Vimu10g01220 754 SMART tpr_5 460 493 IPR019734 GO:0005515
Vimu10g01220 754 SMART tpr_5 628 661 IPR019734 GO:0005515
Vimu10g01220 754 SMART tpr_5 293 326 IPR019734 GO:0005515
Vimu10g01220 754 SMART tpr_5 378 411 IPR019734 GO:0005515
Vimu10g01220 754 SMART tpr_5 670 703 IPR019734 GO:0005515
Vimu10g01220 754 Pfam Tetratricopeptide repeat 293 322 - -
Vimu10g01220 754 Pfam Tetratricopeptide repeat 545 580 - -
Vimu10g01220 754 Gene3D Tetratricopeptide repeat domain 624 739 IPR011990 GO:0005515
Vimu10g01220 754 MobiDBLite consensus disorder prediction 154 189 - -
Vimu10g01220 754 MobiDBLite consensus disorder prediction 19 33 - -
Vimu10g01220 754 ProSiteProfiles TPR repeat profile. 460 493 IPR019734 GO:0005515
Vimu10g01220 754 SUPERFAMILY TPR-like 458 579 IPR011990 GO:0005515
Vimu10g01220 754 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 55 744 - -
Vimu10g01220 754 SUPERFAMILY TPR-like 268 367 IPR011990 GO:0005515
Vimu10g01220 754 ProSiteProfiles TPR repeat profile. 545 578 IPR019734 GO:0005515
Vimu10g01220 754 Pfam Tetratricopeptide repeat 458 534 - -
Vimu10g01220 754 Pfam Tetratricopeptide repeat 629 697 - -
Vimu10g01220 754 SUPERFAMILY TPR-like 339 442 IPR011990 GO:0005515
Vimu10g01220 754 SUPERFAMILY TPR-like 586 728 IPR011990 GO:0005515
Vimu10g01220 754 Gene3D Tetratricopeptide repeat domain 229 445 IPR011990 GO:0005515
Vimu10g01220 754 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01220 Vimu-Chr10 12125498 12129865 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01220 - - gmx:100783201 1161.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00676 7 6735385 6738708 Vimu10g01220 10 12125498 12129865 ECH
Vimu10g01220 10 12125498 12129865 Vimu10g01220 10 12125498 12129865 ECH
Vimu7g00676 7 6735385 6738708 Vimu10g01220 10 12125498 12129865 PCT