Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00650 ATGGGTTCCGTTTGGATGTGCCATTTCTTTCTGTTACTGTCCATACTAGATACTTCTTTTATTGCAACTATGGCCAATAATGCAACAGATTCCTACTGGCTTATCAGAATTAAATCAGAGTTGGTAGATCCATCGGGAGCACTTGGCAACTGGTCTCCGACAACTCATGTCTGCAACTGGAATGGAATAACATGTGCTGTTGATCAGGAATATGTTCTTGGCCTGAATCTGTCTGGTTCAGGAATATCCGGTTCCATTTCAGTTGAGTTTAGACACCTCTCTTCTATTCAAACACTTGATTTGTCTTCAAATTCTCTTTCTGGCTCCATCCCTCCGGAGCTGGGTCAGCTTCAAAATCTAAGAATATTGCAACTATACTCAAATGATCTCTCTGGGAACATTCCTGCAGAGATAGGTAACATGAGGAAGTTGCAAATTCTTAGAATAGGTGACAACATGTTGACTGGTGAAATTCCACCTAGTATTGCCAATATGAGTGAATTGACAGTTTTGGCAATAGGATACTGCCACTTGAATGGAAGCATACCAGTTGGGATCGGTAAATTGAAACATCTAATATCCCTTGATTTAGAAATGAACAGACTTAGTGGCCCCATACCTGAAGAGATTCAAGGCTGTGAAGAGCTCCAAAACTTTGCAGCATCAAACAACATGCTTGAAGGAGACATACCTTTCTCTATGGGGTCGCTTAAATCATTAAAAATTCTGAACCTGGCCAATAACAGTTTGTCTGGGTCGATTCCTCCTGCTTTGAGTCATCTTTCTAACTTGACATACTTGAATTTGCTTGGAAACAAACTACATGGAGAAATTCCTTCTGTGCTTAATAGTCTGATTCAGCTGCAGAAGTTGGACTTGTCCAAAAACAACCTCTCTGGATCAATACCTCTCCTTAATGTAGAATTGCAGAGTCTTGAAACTCTTGTTCTGTCTGATAATGCTCTGACTGGTAGCATTCCAAGTAACTTCTGCCTCAGAGGTTCAAAGCTTCAGCAACTCTTTTTGGCTAGAAACATGCTCTCTGGCAAGTTTCCTTTGGAGTTGCTCAACTGCCCCTCAATCCAACAGTTGGACCTTTCTGATAACAGTTTTGAAGGAGAACTTCCCGCAAGCCTGGACAAACTGAATAACCTCACAGATCTTGTTCTCAACAACAACAGCTTTGTTGGACCTCTCCCTCCTGAAATTGGAAACATTAGTAGCTTAGAGGGTATTTTCCTATTTGGTAATTTCTTGACAGGTAAAATTCCAATGGAGATTGGAAGGCTGCAGAGATTGAGCACCATTTACTTCTATGACAACCGGATGTCTGGACTCATACCAAGAGAGATAACAAACTGCACAAGCTTAGAGGAAATTGACTTCTTTGGAAATCACTTTACTGGGCCCATTCCAGAGACTATAGGCAAGCTCAAGAAATTAGTTGTTCTGCATCTTAGGCAGAATGACTTGTCTGGTCCGATCCCACCAAGCATGGGGTACTGTAAAAACCTTCAGATATTGGCCTTAGCAGATAACATGTTGTCTGGTTCCATTCCATCTACATTCAGTTACCTCTCGGAACTCACCAAAATTACCCTTTACAACAACTCCTTTGAAGGACCTCTCCCTCATTCACTCTCTTCTCTCAAAAGCCTGAAAATCATCAACTTTTCACACAACAAGTTCAATGGAAGTTTCTTTCCTCTCACTGGTTCAAATTCTCTAACCATTCTGGACTTGACCAACAACAGCTTCTCAGGTCCCATCCCTTCCACTCTAGCAAATTCTAGAAATCTCAGCCGTCTCAGACTTGGACAAAATTATCTCACTGGAAGCATTCCTTCTGAATTTGACCAACTCACTGAGCTCAATTTTCTTGATTTATCATTCAACAATTTAACAGGAGAGATGCCACCTCAACTCTCAAACTCCAAGAAAATTGAACACATCCTCATGAGTAACAACAGGTTGAGTGGCAAATTACCTGTTTGGTTGGGAAGCTTACAAGAACTTGGTGAGCTAGATCTCTCATACAATAACTTCAGTGGTAGGGTACCTTCTGAGCTTGGTAACTGCTCAAAATTGCTCAAGCTTTCTCTCCATCACAACAATCTGTCCGGTGAAATCCCCCTAGAGCTTGGAAACCTCACTGCCCTCAATGTCTTCAATTTGCAAAGGAACAGATTCTCTGGCCCCATTCCTCCGACAATTCAGCAATGCACAAAACTGTATGAACTTAGGCTCTCAGAGAACTTTTTAACAGGTACCATACCAGTTGAGCTAGGAGGGCTTGCTGAGTTGCAAGTGATATTGGACTTGAGTAAAAATCTCTTCACTGGTGAGATTCCACCATCTCTAGGAAACCTCGTGAAGCTAGAAAGACTCAACCTCTCTTTCAACCAACTTGAAGGGAAAGTTCCTCCTTCATTGGGCAAACTCACAAGCCTGCACGTGTTGAATCTCTCAAACAACCATCTTGAAGGCCAGATTCCTCCAACATTTTCAGGATTCCCACTAAGCTCATTCCTGAACAATCACGGCTTATGTGGCCCACCACTGAGATCATGCTCTGAATCCACGGCACAGGGGAAAATGCAGCTATCAAACACACAAGTGGCAGCAATCATTGTGGCCATTGTGTTTACTTCCACAGTGATATGCTTAGTGATGTTGTACATCATGCTCAGGATCTGGTGCAACTGGAGAAAAGTTTCCATTTCGAGTGCAGAAGGTGGCATTGTTGCCCATAAGGCAAGAAATGGAGAGTATTGGAATATGAATTCATTTGGGTTGATTCCTTCACCAGATAAGCAGAATTCAGCAGCAACTTCCTTCTATAATCTTAAAATGGAGACCATGGAAAATGCACATATGTAA 2880 0.4198 MGSVWMCHFFLLLSILDTSFIATMANNATDSYWLIRIKSELVDPSGALGNWSPTTHVCNWNGITCAVDQEYVLGLNLSGSGISGSISVEFRHLSSIQTLDLSSNSLSGSIPPELGQLQNLRILQLYSNDLSGNIPAEIGNMRKLQILRIGDNMLTGEIPPSIANMSELTVLAIGYCHLNGSIPVGIGKLKHLISLDLEMNRLSGPIPEEIQGCEELQNFAASNNMLEGDIPFSMGSLKSLKILNLANNSLSGSIPPALSHLSNLTYLNLLGNKLHGEIPSVLNSLIQLQKLDLSKNNLSGSIPLLNVELQSLETLVLSDNALTGSIPSNFCLRGSKLQQLFLARNMLSGKFPLELLNCPSIQQLDLSDNSFEGELPASLDKLNNLTDLVLNNNSFVGPLPPEIGNISSLEGIFLFGNFLTGKIPMEIGRLQRLSTIYFYDNRMSGLIPREITNCTSLEEIDFFGNHFTGPIPETIGKLKKLVVLHLRQNDLSGPIPPSMGYCKNLQILALADNMLSGSIPSTFSYLSELTKITLYNNSFEGPLPHSLSSLKSLKIINFSHNKFNGSFFPLTGSNSLTILDLTNNSFSGPIPSTLANSRNLSRLRLGQNYLTGSIPSEFDQLTELNFLDLSFNNLTGEMPPQLSNSKKIEHILMSNNRLSGKLPVWLGSLQELGELDLSYNNFSGRVPSELGNCSKLLKLSLHHNNLSGEIPLELGNLTALNVFNLQRNRFSGPIPPTIQQCTKLYELRLSENFLTGTIPVELGGLAELQVILDLSKNLFTGEIPPSLGNLVKLERLNLSFNQLEGKVPPSLGKLTSLHVLNLSNNHLEGQIPPTFSGFPLSSFLNNHGLCGPPLRSCSESTAQGKMQLSNTQVAAIIVAIVFTSTVICLVMLYIMLRIWCNWRKVSISSAEGGIVAHKARNGEYWNMNSFGLIPSPDKQNSAATSFYNLKMETMENAHM 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00650 959 SMART LRR_typ_2 814 837 IPR003591 -
Vimu7g00650 959 SMART LRR_typ_2 621 645 IPR003591 -
Vimu7g00650 959 SMART LRR_typ_2 93 117 IPR003591 -
Vimu7g00650 959 SMART LRR_typ_2 309 333 IPR003591 -
Vimu7g00650 959 SMART LRR_typ_2 790 813 IPR003591 -
Vimu7g00650 959 SMART LRR_typ_2 189 212 IPR003591 -
Vimu7g00650 959 SMART LRR_typ_2 478 502 IPR003591 -
Vimu7g00650 959 SMART LRR_typ_2 237 261 IPR003591 -
Vimu7g00650 959 SMART LRR_typ_2 669 693 IPR003591 -
Vimu7g00650 959 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 279 375 - -
Vimu7g00650 959 ProSiteProfiles Leucine-rich repeat profile. 239 262 IPR001611 GO:0005515
Vimu7g00650 959 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 27 183 - -
Vimu7g00650 959 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 472 568 - -
Vimu7g00650 959 Gene3D Ribonuclease Inhibitor 307 522 IPR032675 -
Vimu7g00650 959 Gene3D Ribonuclease Inhibitor 523 861 IPR032675 -
Vimu7g00650 959 ProSiteProfiles Leucine-rich repeat profile. 287 309 IPR001611 GO:0005515
Vimu7g00650 959 Pfam Leucine Rich Repeat 816 838 IPR001611 GO:0005515
Vimu7g00650 959 Pfam Leucine Rich Repeat 239 261 IPR001611 GO:0005515
Vimu7g00650 959 Pfam Leucine Rich Repeat 792 814 IPR001611 GO:0005515
Vimu7g00650 959 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Vimu7g00650 959 Gene3D Ribonuclease Inhibitor 27 306 IPR032675 -
Vimu7g00650 959 SUPERFAMILY L domain-like 334 638 - -
Vimu7g00650 959 PRINTS Leucine-rich repeat signature 814 827 - -
Vimu7g00650 959 PRINTS Leucine-rich repeat signature 288 301 - -
Vimu7g00650 959 Pfam Leucine rich repeat 575 634 IPR001611 GO:0005515
Vimu7g00650 959 Pfam Leucine rich repeat 504 563 IPR001611 GO:0005515
Vimu7g00650 959 FunFam Uncharacterized protein 184 278 - -
Vimu7g00650 959 FunFam Uncharacterized protein 376 471 - -
Vimu7g00650 959 PANTHER UNNAMED PRODUCT 8 532 - -
Vimu7g00650 959 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 569 861 - -
Vimu7g00650 959 SUPERFAMILY RNI-like 573 839 - -
Vimu7g00650 959 SUPERFAMILY RNI-like 75 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00650 Vimu-Chr7 6532816 6535695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00650 43 858 Receptor kinase-like Gene Family AT5G46330 36.087 5.00e-129 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00650 - - gmx:100818792 1660.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00650 7 6532816 6535695 Vimu7g00650 7 6532816 6535695 ECH
Vimu7g00650 7 6532816 6535695 Vimu10g01276 10 12994211 12999019 PCT