Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01276 ATGATCACACTTTCATCCATGGGTTCCATTTGCATGTGCCATTTTATTCTACCACTAACCATTGCTGTTGTTGTAACTCTAGGAGACAACACAGCAGAATCCTACTGGCTTCTAAAGATTAAATCAGAACAGGTTGATCCATTAGGAGCCCTGAGAAACTGGTCTCCAACAACTCATTTTTGTAGCTGGAATGGAATAACATGTGATGTTGATGAGGCACATGTGGTAGGCCTTAATTTGTCTGGCTCAGGAATATCAGGTTCCATTCCAGGTGAGTTCAGTCACCTAATTTCTCTTCAAGCACTTGATTTGTCTTCAAATAACCTCACAGGCTCCATCCCTTCTGAACTTGGGCAGCTTCAAAATCTAAGAATACTGCTTCTGTACTCAAATTATCTCTCCAGCAACATTCCTGAAGAGATAGGTCATTTGAGTAAGTTGCAAGTTCTTAGACTAGGAGATAACAGTTTGGCAGATGAAATCCCACCTAGCGTTGGCAACTTGAGTGAGTTGACAGTGTTAGGTGTAGCCAACTGCAACTTAAGTGGAAGCATACCTGTTGAGGTTGGTAACTTGAAGCATCTTGTGTCTCTTGATTTACAAATGAACAATCTTAGCGGATTCATACCTAAAGAGATTCAAGGCTGTCAAGAGCTCCAGAATTTTGCAGCATCAAACAACATGCTTGAAGGAGAAATACCCTCCTCAATGGGGTCTCTGAAATCATTGAGAATTTTGAACCTGGCTAATAACACTCTATCTGGATCAATTCCTACCTCTTTGAGTCTTCTCTCAAATTTGACATACCTCAATTTGCTTGGAAACAAACTAAATGGTGAAATTCCTTCAGAGCTTAACAGTTTGAGCCAGCTACAGAAGCTTGACTTATCCAGAAACAACCTTTCTGGATCACTGACCCTCCTTAATGTCAACTTTCAGAATCTTGAAACTATGGTTCTGTCTGATAATGCTTTAACAGGTATTCCATATAACTTCTGCCTCAGAGGTTCTAAACTTCAGCAACTGTTCTTGGCTAGGAATAAGCTTTCTGGAGGATTTCCCTTGGGGATACTCAACTGCTCCTCAATCCAACAGGTTGACCTTTCTGACAACAGTTTTGAAGGTGAACTTCCATCCAACCTGGACAAACTACAGAATCTCACAGATCTTATGCTCAACAACAACAGCTTCATTGGATCTCTACCTCCAGCAATTGGAAATATCAGTAGCTTGAGAAGTCTTTTCTTGTTTGGAAACTCTTTCACAGGAAAAATCCCAGTTGAGATTGGAAGGCTAAAGAGGTTGAATACCATTTACCTCTATGATAACCAGATGTCTGGACCTATTCCAAGAGAGTTAACAAACTGCACAAGCTTAACTGAAATTGACTTCTTTGGAAACCATTTTTATGGCCCTATTCCAGAGACTATAGGTAAGCTAAAGGACCTAACTGTTCTCCATTTAAGGCAAAATGATCTGTCAGGTCCAATCCCACCAAGCATGGGGTACTGTAAAAGGCTTCAGTTATTGGCATTAGCAGATAACAAGTTGTCAGGTTCCATACCCCCCACATTCAGTTACCTTTCACAACTTAGTACCATTACCCTTTACAACAACAACTTTGAAGGACCACTACCTTATTCCCTCTCTCTTCTTAGAAACCTTAAAATCATAAATTTTTCCAATAACAAGTTCAGTGGTAGTATCTTTCCTCTGACTGGTTCAAATTCTCTCACTGTTTTGGACTTGACAAACAACAGCTTCTCAGGTTCCATCCCTTCTATTCTAGCCAACTCTGGAGATCTCACCCGTCTCAGACTTGCAAACAATTTTCTCACAGGAACCATTCCTTTTGAACTTGGTCACCTCACTAAGCTAGACTTCCTTGATTTATCATTCAATAACTTAACAGGACATGTGCCACCTCAACTCTCCAACTGCAAGAAAATTGAACACCTTCTACTGAACAATAACAGATTGAGTGGCCAAATGTTGCCGTGGTTAGGAAGCTTGCAAGAACTTGGTGAGCTGGATCTCTCATTCAACAACTTCCACGGAAGAGTTCCTGCTGAGCTTGGAGGCTGCTCAAAGTTGCTTAAGCTTTCTCTCCATCACAACAATCTCTCTGGAGAAATCCCTCTAGAGATTGGAAACCTTACTTCACTCAATGTCTTCAGCTTGCAAAGGAATAGTCTCTCTGGCCACATTCCATCAACAATTCAGCAATGCTCTAAGCTGTATGAGCTAAGGCTCTCAGAGAACTTCCTCTCAGGTATTATACCAGTTGGACTAGGAGCAGTCACTGAGTTGCAAGTCATATTGGACCTCAGTAGAAACCTCTTTTCTGGTGAGATTCCGTCATCTCTGGGAAATCTCATGAAGCTAGAAAGACTTGATCTTTCTTTTAACCATCTTCAAGGACAAGTTCCTCCTTCACTTGGTCAACTTACCAGCCTTCATGTGCTAAATCTCTCAAATAACCATCTTCATGGCCTCATTCCATCAACCTTTTCAGGGTTCCCACTAAGCTCTTTTCTGAATAATGACCACTTGTGTGGCCCTCCACTAGCATTATGCTCAGAAGCTACGGGAATGAAGCTGTCAAACACGCAAGTAGCAGCAATCATAGTAGCCATTGTCCTTACTTCAACTCTGATATGCGTAGTATTATTGTATATAATGTTGAGAATCTGGTGCAACTGGAAAAAGGTAGCTGTTTCAAGTGAAGATGGTGGCATGGTTGAGCAGAAGACAAGAAATGGAGAGTACTGGAATATGAATTCCCCTGAGCTGCTTTCTTCACCAGATATACAAATTTCAGCTACACCTTGCATTTGTAATCTCAAAATTGATGCCTCAGCCAGGGAAAATACCTCGGTTAGATAA 2886 0.4116 MITLSSMGSICMCHFILPLTIAVVVTLGDNTAESYWLLKIKSEQVDPLGALRNWSPTTHFCSWNGITCDVDEAHVVGLNLSGSGISGSIPGEFSHLISLQALDLSSNNLTGSIPSELGQLQNLRILLLYSNYLSSNIPEEIGHLSKLQVLRLGDNSLADEIPPSVGNLSELTVLGVANCNLSGSIPVEVGNLKHLVSLDLQMNNLSGFIPKEIQGCQELQNFAASNNMLEGEIPSSMGSLKSLRILNLANNTLSGSIPTSLSLLSNLTYLNLLGNKLNGEIPSELNSLSQLQKLDLSRNNLSGSLTLLNVNFQNLETMVLSDNALTGIPYNFCLRGSKLQQLFLARNKLSGGFPLGILNCSSIQQVDLSDNSFEGELPSNLDKLQNLTDLMLNNNSFIGSLPPAIGNISSLRSLFLFGNSFTGKIPVEIGRLKRLNTIYLYDNQMSGPIPRELTNCTSLTEIDFFGNHFYGPIPETIGKLKDLTVLHLRQNDLSGPIPPSMGYCKRLQLLALADNKLSGSIPPTFSYLSQLSTITLYNNNFEGPLPYSLSLLRNLKIINFSNNKFSGSIFPLTGSNSLTVLDLTNNSFSGSIPSILANSGDLTRLRLANNFLTGTIPFELGHLTKLDFLDLSFNNLTGHVPPQLSNCKKIEHLLLNNNRLSGQMLPWLGSLQELGELDLSFNNFHGRVPAELGGCSKLLKLSLHHNNLSGEIPLEIGNLTSLNVFSLQRNSLSGHIPSTIQQCSKLYELRLSENFLSGIIPVGLGAVTELQVILDLSRNLFSGEIPSSLGNLMKLERLDLSFNHLQGQVPPSLGQLTSLHVLNLSNNHLHGLIPSTFSGFPLSSFLNNDHLCGPPLALCSEATGMKLSNTQVAAIIVAIVLTSTLICVVLLYIMLRIWCNWKKVAVSSEDGGMVEQKTRNGEYWNMNSPELLSSPDIQISATPCICNLKIDASARENTSVR 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01276 961 Gene3D Ribonuclease Inhibitor 309 527 IPR032675 -
Vimu10g01276 961 PRINTS Leucine-rich repeat signature 288 301 - -
Vimu10g01276 961 PRINTS Leucine-rich repeat signature 99 112 - -
Vimu10g01276 961 FunFam Uncharacterized protein 187 281 - -
Vimu10g01276 961 SUPERFAMILY L domain-like 666 851 - -
Vimu10g01276 961 SMART LRR_typ_2 240 264 IPR003591 -
Vimu10g01276 961 SMART LRR_typ_2 623 647 IPR003591 -
Vimu10g01276 961 SMART LRR_typ_2 671 695 IPR003591 -
Vimu10g01276 961 SMART LRR_typ_2 816 839 IPR003591 -
Vimu10g01276 961 SMART LRR_typ_2 312 335 IPR003591 -
Vimu10g01276 961 SMART LRR_typ_2 384 408 IPR003591 -
Vimu10g01276 961 SMART LRR_typ_2 480 504 IPR003591 -
Vimu10g01276 961 SMART LRR_typ_2 792 815 IPR003591 -
Vimu10g01276 961 SMART LRR_typ_2 144 168 IPR003591 -
Vimu10g01276 961 SMART LRR_typ_2 96 120 IPR003591 -
Vimu10g01276 961 SMART LRR_typ_2 192 215 IPR003591 -
Vimu10g01276 961 SMART LRR_typ_2 719 743 IPR003591 -
Vimu10g01276 961 SMART LRR_typ_2 288 311 IPR003591 -
Vimu10g01276 961 Gene3D Ribonuclease Inhibitor 30 308 IPR032675 -
Vimu10g01276 961 ProSiteProfiles Leucine-rich repeat profile. 818 839 IPR001611 GO:0005515
Vimu10g01276 961 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 30 186 - -
Vimu10g01276 961 PANTHER POLYGALACTURONASE INHIBITOR 1 576 663 - -
Vimu10g01276 961 Gene3D Ribonuclease Inhibitor 528 866 IPR032675 -
Vimu10g01276 961 SUPERFAMILY L domain-like 35 323 - -
Vimu10g01276 961 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 571 863 - -
Vimu10g01276 961 Pfam Leucine rich repeat N-terminal domain 36 69 IPR013210 -
Vimu10g01276 961 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 474 570 - -
Vimu10g01276 961 Pfam Leucine Rich Repeat 818 840 IPR001611 GO:0005515
Vimu10g01276 961 Pfam Leucine Rich Repeat 794 814 IPR001611 GO:0005515
Vimu10g01276 961 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 282 377 - -
Vimu10g01276 961 FunFam Uncharacterized protein 378 473 - -
Vimu10g01276 961 ProSiteProfiles Leucine-rich repeat profile. 242 264 IPR001611 GO:0005515
Vimu10g01276 961 ProSiteProfiles Leucine-rich repeat profile. 98 120 IPR001611 GO:0005515
Vimu10g01276 961 SUPERFAMILY RNI-like 376 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01276 Vimu-Chr10 12994211 12999019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01276 181 883 Receptor kinase-like Gene Family AT5G46330 35.142 5.02e-106 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01276 - - gmx:100802757 1576.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01276 10 12994211 12999019 Vimu10g01276 10 12994211 12999019 ECH
Vimu7g00650 7 6532816 6535695 Vimu10g01276 10 12994211 12999019 PCT