Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00625 ATGGGAATGATGGAAGAGGAGAGTAGCAACAGCAACATAGAAGGTGGAGCTTCGCTGCCATCGTCAGGTTCAGACGCCAAGAAGCGAAGAGTTACGTACTTTTACGAACCAACTATCGGCGATTACTACTACGGCCAGGGCCACCCAATGAAACCGCACCGCATCCGCATGGCGCACAACCTTATCGTCCACTACTCCCTCCACCGCCGCATGGAGATTAACCGCCCTTTCCCAGCCTCCCCCAACGACATTCGCCGTTTTCACTCCGATGACTACGTTCACTTCCTCTCTTCCGTCTCTCCCGAGACCCTCGCCGACATCACCTTCTCTCGTCAACTCAAGCGCTTCAACGTCGGCGAAGACTGTCCTGTCTTCGACGGCCTCTTCGACTTCTGTCAGGCTTCCGCTGGTGGCTCCATCGGCGCCGCCGTCAAACTCAACCGCGGCGACTCCGACATCGCCATCAATTGGGCCGGCGGCCTCCACCACGCCAAGAAATCCGAAGCCTCTGGATTCTGTTACGTCAACGACATTGTTCTCGGTATCCTCGAGCTTCTCAAAGTTCACAGGCGAGTTCTGTATGTTGACATTGATGTTCACCATGGTGATGGGGTCGAGGAGGCCTTTTACACCACTGATAGAGTGATGACAGTCTCTTTTCACAAGTTTGGTGACTTTTTCCCTGGTACAGGCCATATCAAAGACATTGGGGTGGGCTCGGGAAAGAATTATGCTGTCAATGTCCCATTAAACGACGGAATGGATGATGAAAATTTTCGTGGTCTGTTTCGAACTGTCATTCATAAAGTCATGGAGGTTTATCAACCTGAGGCAGTTGTTCTTCAATGTGGAGCTGATTCATTGTCTGGTGACAGGTTGGGTTGCTTCAACTTGTCTGTGAAAGGTCACGCAGATTGCCTTCGATTCCTTAGATCTTTCAATGTTCCTTTAATGGTTTTGGGTGGTGGTGGATATACAATTCGAAATGTTGCCCGCTGTTGGTGTTATGAGACAGCAGTGGCAGTAGGAGTTGAGCCTGACAATAAGTTGCCTTATAATGAATATTATGAATATTTTGGTCCAGATTATACTCTCTATGTCGATCCAAGCAACATGGAGAACCTTAACACACCCAAGGATATGGAAAAAATAAGTATACCTTTTCAGACAACACCACCTACCTTAGAAATTCCAGAAGAGGTGGAAGAAGACATGGATAGAAGACCAAAACTTCGCAAATGGGATGGTGAAGATTATGATTCCGACCCTGATGAAGGTGAAAAAGCTAATTCCAAGTTCTCAAGTGTCACTGCCCATATGAGGGATATTGCAGATGACATGGAAGAAGAGAAGCCAGGAGTGCATCCCTCGTCTTGTTGTTGA 1383 0.4823 MGMMEEESSNSNIEGGASLPSSGSDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPASPNDIRRFHSDDYVHFLSSVSPETLADITFSRQLKRFNVGEDCPVFDGLFDFCQASAGGSIGAAVKLNRGDSDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGSGKNYAVNVPLNDGMDDENFRGLFRTVIHKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLYVDPSNMENLNTPKDMEKISIPFQTTPPTLEIPEEVEEDMDRRPKLRKWDGEDYDSDPDEGEKANSKFSSVTAHMRDIADDMEEEKPGVHPSSCC 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00625 460 PIRSF HDAC_I_euk 10 457 IPR003084 GO:0004407|GO:0016575
Vimu7g00625 460 MobiDBLite consensus disorder prediction 439 453 - -
Vimu7g00625 460 PRINTS Histone deacetylase superfamily signature 276 286 IPR000286 -
Vimu7g00625 460 PRINTS Histone deacetylase superfamily signature 159 182 IPR000286 -
Vimu7g00625 460 PRINTS Histone deacetylase superfamily signature 191 206 IPR000286 -
Vimu7g00625 460 SUPERFAMILY Arginase/deacetylase 29 385 IPR023696 -
Vimu7g00625 460 MobiDBLite consensus disorder prediction 1 19 - -
Vimu7g00625 460 FunFam Histone deacetylase 27 397 - -
Vimu7g00625 460 MobiDBLite consensus disorder prediction 394 460 - -
Vimu7g00625 460 CDD HDAC_classI 34 341 - -
Vimu7g00625 460 PANTHER HISTONE DEACETYLASE 2-RELATED 13 354 - -
Vimu7g00625 460 Pfam Histone deacetylase domain 48 339 IPR023801 -
Vimu7g00625 460 Gene3D Histone deacetylase domain 27 397 IPR037138 -
Vimu7g00625 460 MobiDBLite consensus disorder prediction 1 25 - -
Vimu7g00625 460 PRINTS Histone deacetylase signature 137 157 IPR003084 GO:0004407|GO:0016575
Vimu7g00625 460 PRINTS Histone deacetylase signature 178 194 IPR003084 GO:0004407|GO:0016575
Vimu7g00625 460 PRINTS Histone deacetylase signature 83 101 IPR003084 GO:0004407|GO:0016575
Vimu7g00625 460 PRINTS Histone deacetylase signature 237 250 IPR003084 GO:0004407|GO:0016575
Vimu7g00625 460 PRINTS Histone deacetylase signature 254 272 IPR003084 GO:0004407|GO:0016575
Vimu7g00625 460 PRINTS Histone deacetylase signature 116 133 IPR003084 GO:0004407|GO:0016575
Vimu7g00625 460 PRINTS Histone deacetylase signature 50 67 IPR003084 GO:0004407|GO:0016575
Vimu7g00625 460 MobiDBLite consensus disorder prediction 401 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00625 Vimu-Chr7 6263243 6266061 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00625 K06067 - gmx:100807923 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00625 7 6263243 6266061 Vimu7g00625 7 6263243 6266061 ECH
Vimu7g00625 7 6263243 6266061 Vimu10g01298 10 13356656 13359988 PCT