Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01298 ATGGCGAGAGGAGAGAGAGCAGAGACGGAGAGTGGCGCGTCGTTACCGTCGGTGGGTACGGACGCCATGAAGCGGAGAATCACGTATTTCTACGAACCCTGCATCGGCGACTACTACTACGGTCAAGGACATCCAATGAAGCCGCACCGCATTCGCATGGCCCACAACCTCATCGTCCACTACGGTCTCCACCGCCGCATGCAGGTTAATCGTCCCTTTCCGGCGGCGGAAGCAGACATCGGCCGTTTCCACTCCGATGACTACGTCGAATTCCTGTCCTCCGTTTCGCCGCAAATCCTATCCGAGAACTCCCACTCCCACTACCGCCAGCTGAAGCGCTTCAACGTCGGGGAGGACTGCCCCGTCTTCGACGGGCTCTTCGACTTCTGCCGCGCATCCGCCGGCGGCTCCATTGGCGCCGCCGTCCGACTCAACCGCGCCGACGCCGACATCGCCATCAACTGGGCCGGCGGCCTGCACCACGCCAAGAAGGCTGAGGCCTCCGGCTTCTGCTACGTCAACGACATTGTTCTCGGCATTCTTGAACTTCTCAAAGTTCATAGGCGTGTGCTGTATATTGATATTGATGTTCACCATGGAGATGGGGTCGAGGAGGCATTTTACACTACTGATAGGGTCATGACAGTGTCATTTCATAAGTTTGGGGATTTTTTCCCAGGAACTGGGCACATTAAAGACATTGGGGTGGGTGCTGGAAAGAATTATTCTCTAAATGTCCCACTTAATGATGGATTGGATGATGAGACTTTCCGTTCTCTGTTTCGCCCCGTCATTCAAAAAGTCATGAATGTTTATCAACCAGATGCAGTTGTTCTTCAGTGTGGAGCTGACTCCTTGTCTGGTGATCGGTTGGGTTGCTTCAACTTGACTGTCAAGGGTCATGCAGATTGCCTTCGATTCCTCAGATCATTCAATGTTCCTCTAATGGTGTTGGGTGGGGGAGGATATACAGTCCGAAATGTTGCCCGTTGTTGGTGTTATGAGACCGCAGTGGCAGTAGGAGTGGAGCCTAATCCGAAGTTGCCTTACAATGAATATTATGAATATTTTGGTCCAGACTATACTCTTCATCCCGAGCCATCCAACATGGAAAACTTAAACACACCCAGGGATCTGGAAAAAATTCGGAATGCATTATTGGAACAACTTTCCAGGCTTCCCCATGCACCCAGTGTGCCTTTTCAAACAACACCATCAATTATACAAGTTCCTGAAGAGGAAGAGGAGCATATGGATATAAGACCAAAACGTCGCATATGGAGTGGTGAAGATTTTGATTCCGATAACGATGATGACATGGCTAGTTCAAAGAACTCTGTTTTAACTGCCCAAACG 1356 0.5066 MARGERAETESGASLPSVGTDAMKRRITYFYEPCIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMQVNRPFPAAEADIGRFHSDDYVEFLSSVSPQILSENSHSHYRQLKRFNVGEDCPVFDGLFDFCRASAGGSIGAAVRLNRADADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGAGKNYSLNVPLNDGLDDETFRSLFRPVIQKVMNVYQPDAVVLQCGADSLSGDRLGCFNLTVKGHADCLRFLRSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPNPKLPYNEYYEYFGPDYTLHPEPSNMENLNTPRDLEKIRNALLEQLSRLPHAPSVPFQTTPSIIQVPEEEEEHMDIRPKRRIWSGEDFDSDNDDDMASSKNSVLTAQT 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01298 452 PANTHER HISTONE DEACETYLASE 2-RELATED 15 352 - -
Vimu10g01298 452 Gene3D Histone deacetylase domain 17 405 IPR037138 -
Vimu10g01298 452 SUPERFAMILY Arginase/deacetylase 26 392 IPR023696 -
Vimu10g01298 452 PIRSF HDAC_I_euk 9 451 IPR003084 GO:0004407|GO:0016575
Vimu10g01298 452 CDD HDAC_classI 30 339 - -
Vimu10g01298 452 PRINTS Histone deacetylase signature 235 248 IPR003084 GO:0004407|GO:0016575
Vimu10g01298 452 PRINTS Histone deacetylase signature 79 97 IPR003084 GO:0004407|GO:0016575
Vimu10g01298 452 PRINTS Histone deacetylase signature 114 131 IPR003084 GO:0004407|GO:0016575
Vimu10g01298 452 PRINTS Histone deacetylase signature 46 63 IPR003084 GO:0004407|GO:0016575
Vimu10g01298 452 PRINTS Histone deacetylase signature 252 270 IPR003084 GO:0004407|GO:0016575
Vimu10g01298 452 PRINTS Histone deacetylase signature 176 192 IPR003084 GO:0004407|GO:0016575
Vimu10g01298 452 PRINTS Histone deacetylase signature 135 155 IPR003084 GO:0004407|GO:0016575
Vimu10g01298 452 FunFam Histone deacetylase 23 404 - -
Vimu10g01298 452 Pfam Histone deacetylase domain 44 337 IPR023801 -
Vimu10g01298 452 MobiDBLite consensus disorder prediction 410 431 - -
Vimu10g01298 452 MobiDBLite consensus disorder prediction 409 452 - -
Vimu10g01298 452 PRINTS Histone deacetylase superfamily signature 189 204 IPR000286 -
Vimu10g01298 452 PRINTS Histone deacetylase superfamily signature 157 180 IPR000286 -
Vimu10g01298 452 PRINTS Histone deacetylase superfamily signature 274 284 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01298 Vimu-Chr10 13356656 13359988 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01298 K06067 - gmx:100801159 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01298 10 13356656 13359988 Vimu10g01298 10 13356656 13359988 ECH
Vimu7g00625 7 6263243 6266061 Vimu10g01298 10 13356656 13359988 PCT