Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu7g00611 | ATGCAAGCCACCATGGATCCCCACCCAGGAACCTTCCCCGTTCTCTCCTACGTCATGTCTCGTCTCCCTTCTTTCGGCCCCAGAACTCCCGCCTCCGCCTCCGCCTCCGCCTCCACCTCCGACTCCGCCTCCACTTCCCGTTCCCATCACGTCGACATCGAACAGCCACCTCACTCCGATGCTTCCTCTTCCTCCATCGTGGGCCAAATGCCCAATCTAGCCAACCCGGAAATGCTGGCCTCCATGACCCGCGCCATCTCCGACGTTGCCCAGGCTCGATCCGTCTTCAAGGTCATGGGGCCCCGGCCCACCCACGAGGAGGTCGACGAGGCCAAGGCTAAGCTAGCGGACCTGGAAGCCCACCTGTCCCGCCAACTGGAAGAGATCGTGGGCCTGCCCAGGCCACCGGAGATCGACGAGGCCCGCTGGACTGCCCACATGGCGGAGAAGGAGAAGGTCATCAAGGAATCCACGGAGAAAGAGAAGCGCATTTTGAAGTCCATCATTCAGCTCGACAACATGCACGACGCCTACGGTAAACTCCTCAAGGACGCCGAGAAGCGCTTGGTCAAGATTTACGAGAACGACGGCGCCGACTACGACAACAACAACGAAAACGACGAGGACGACGAGGACAGTGTCCAAGTTAAAGAACAGGTTGAGGGGATTTTGAAAGAGGCCTACGGAAAAGGGGTGGAGCGAATCGCTCTCTCCGGCAAGCGCCTCAAGTACCTGCCTGAAGCATTTGGCCACATTCCTGCATTGGTCGTCCTCGATGTCTCCACCAATCAACTTTCGGTGATTCCTGATTCCATATGTGGATTGGAAAGTCTCGAGGAGCTTAATCTCTCTTCCAATGCTTTGGAGTCTCTGCCCGAGTCAATTGGCTTGTTGCAGAAGTTGAAGATCCTCAATGTGTCCGGAAACAAGCTGTCTGCTCTTCCTGATTCCATTAGTAAGTGCAGTTCATTGGTGGAGCTAGATGCAAGCTTTAACAGCCTGTCGTATTTGCCAACAAACATTGGATTTGAGTTGCGTAATTTACAGAAGCTTATGATTCAGTTGAACAAGATTCGATCTCTTCCCTCGTCAATTTGTGAGATGAAATCCCTGCGTTATCTGGATGCTCACTTCAACGAGCTGCGCGGGCTTCCGGTTGCGATTGGGAAATTGACTAATCTTCAAGTTCTAAACCTGAGCAGTAACTTCAGTGACCTCAAAGAACTTCCAGAGACCTTTGGTGATTTGATCAACCTCAGGGAGTTAGATCTCAGCAACAACCAAATTCATGCACTTCCTGATTCTTTTGGTCGCCTTCATAACTTGACCAAGCTAAACTTGGAACAGAATCCTGTTGAAGTGCCACCTATGCATGTTGTGGATGAAGGGCTCCAAGCCATAAAAGGGTTCATGTCTCAGAGATGGATTGATATATTGGAGGAGGAAGAAAGGAAAAGCACCCAGGAAGTGCAAGAACAAGGAGAAAATGGGTGGTTAACGCGAAGCACCTCTTGGCTGAAGAATGTTTCTGAAAATGTAACTGAGATGATTATGTCCCCAAAAACTCCCAAAGAAGCGTATCTTAATCAGCAGCTATGA | 1599 | 0.5122 | MQATMDPHPGTFPVLSYVMSRLPSFGPRTPASASASASTSDSASTSRSHHVDIEQPPHSDASSSSIVGQMPNLANPEMLASMTRAISDVAQARSVFKVMGPRPTHEEVDEAKAKLADLEAHLSRQLEEIVGLPRPPEIDEARWTAHMAEKEKVIKESTEKEKRILKSIIQLDNMHDAYGKLLKDAEKRLVKIYENDGADYDNNNENDEDDEDSVQVKEQVEGILKEAYGKGVERIALSGKRLKYLPEAFGHIPALVVLDVSTNQLSVIPDSICGLESLEELNLSSNALESLPESIGLLQKLKILNVSGNKLSALPDSISKCSSLVELDASFNSLSYLPTNIGFELRNLQKLMIQLNKIRSLPSSICEMKSLRYLDAHFNELRGLPVAIGKLTNLQVLNLSSNFSDLKELPETFGDLINLRELDLSNNQIHALPDSFGRLHNLTKLNLEQNPVEVPPMHVVDEGLQAIKGFMSQRWIDILEEEERKSTQEVQEQGENGWLTRSTSWLKNVSENVTEMIMSPKTPKEAYLNQQL | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu7g00611 | 532 | FunFam | Plant intracellular Ras-group-related LRR protein 9 | 150 | 336 | - | - | |
| Vimu7g00611 | 532 | ProSiteProfiles | Leucine-rich repeat profile. | 300 | 321 | IPR001611 | GO:0005515 | |
| Vimu7g00611 | 532 | SMART | LRR_typ_2 | 322 | 344 | IPR003591 | - | |
| Vimu7g00611 | 532 | SMART | LRR_typ_2 | 416 | 439 | IPR003591 | - | |
| Vimu7g00611 | 532 | SMART | LRR_typ_2 | 345 | 368 | IPR003591 | - | |
| Vimu7g00611 | 532 | SMART | LRR_typ_2 | 275 | 297 | IPR003591 | - | |
| Vimu7g00611 | 532 | SMART | LRR_typ_2 | 252 | 274 | IPR003591 | - | |
| Vimu7g00611 | 532 | SMART | LRR_typ_2 | 298 | 321 | IPR003591 | - | |
| Vimu7g00611 | 532 | SMART | LRR_typ_2 | 391 | 415 | IPR003591 | - | |
| Vimu7g00611 | 532 | Gene3D | Ribonuclease Inhibitor | 404 | 461 | IPR032675 | - | |
| Vimu7g00611 | 532 | ProSiteProfiles | Leucine-rich repeat profile. | 418 | 439 | IPR001611 | GO:0005515 | |
| Vimu7g00611 | 532 | Coils | Coil | 108 | 128 | - | - | |
| Vimu7g00611 | 532 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING | 344 | 450 | - | - | |
| Vimu7g00611 | 532 | SMART | LRR_bac_2 | 368 | 387 | - | - | |
| Vimu7g00611 | 532 | SMART | LRR_bac_2 | 391 | 412 | - | - | |
| Vimu7g00611 | 532 | SMART | LRR_bac_2 | 345 | 364 | - | - | |
| Vimu7g00611 | 532 | SMART | LRR_bac_2 | 321 | 340 | - | - | |
| Vimu7g00611 | 532 | SMART | LRR_bac_2 | 416 | 435 | - | - | |
| Vimu7g00611 | 532 | SMART | LRR_bac_2 | 252 | 271 | - | - | |
| Vimu7g00611 | 532 | SMART | LRR_bac_2 | 275 | 294 | - | - | |
| Vimu7g00611 | 532 | SMART | LRR_bac_2 | 298 | 317 | - | - | |
| Vimu7g00611 | 532 | PRINTS | Leucine-rich repeat signature | 416 | 429 | - | - | |
| Vimu7g00611 | 532 | PRINTS | Leucine-rich repeat signature | 278 | 291 | - | - | |
| Vimu7g00611 | 532 | ProSiteProfiles | Leucine-rich repeat profile. | 277 | 298 | IPR001611 | GO:0005515 | |
| Vimu7g00611 | 532 | Pfam | Leucine rich repeat | 246 | 288 | IPR001611 | GO:0005515 | |
| Vimu7g00611 | 532 | Pfam | Leucine rich repeat | 392 | 451 | IPR001611 | GO:0005515 | |
| Vimu7g00611 | 532 | MobiDBLite | consensus disorder prediction | 27 | 46 | - | - | |
| Vimu7g00611 | 532 | FunFam | Plant intracellular Ras-group-related LRR protein 2 | 340 | 515 | - | - | |
| Vimu7g00611 | 532 | Coils | Coil | 476 | 496 | - | - | |
| Vimu7g00611 | 532 | Gene3D | Ribonuclease Inhibitor | 337 | 403 | IPR032675 | - | |
| Vimu7g00611 | 532 | Gene3D | Ribonuclease Inhibitor | 149 | 336 | IPR032675 | - | |
| Vimu7g00611 | 532 | SUPERFAMILY | L domain-like | 226 | 457 | - | - | |
| Vimu7g00611 | 532 | MobiDBLite | consensus disorder prediction | 25 | 69 | - | - | |
| Vimu7g00611 | 532 | Pfam | Leucine Rich Repeat | 300 | 321 | IPR001611 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu7g00611 | Vimu-Chr7 | 6159888 | 6162216 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu7g00611 | 245 | 457 | Receptor kinase-like Gene Family | AT5G56040 | 30.741 | 6.09e-16 | 79.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu7g00611 | - | - | vun:114179436 | 921.383 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu7g00611 | 7 | 6159888 | 6162216 | Vimu7g00611 | 7 | 6159888 | 6162216 | ECH | |
| Vimu7g00611 | 7 | 6159888 | 6162216 | Vimu10g01308 | 10 | 13673768 | 13676653 | PCT |