Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01308 ATGGATCCAAACCCTCGAACCTTTCCCATCCTCTCCTATGTCATCTCGCGCCTCCCTTCTCTCACTCCCAGACCACCCGCCGCCGCTAACTCCGACTCCGACCACTTCGACCTCGAGCAGCCGCGGACCCCGGAGATCGTCGGCCAAATGCCGCACCTCGCCGACCCGGACCTCATGGCCTCCATGGGCCGGTCCGTATCTCAGGTGGTCCAGGCCCGAACGGTCCTCAACCTGATCGGGGAGCGGCCCACGCACGAGGAAGTCGACAGCGCCAGGGCCAGGCTGGCGGAGATCGAGGCTCAGCTGTCCCACGAACTGGAGGAGATCGTGCTCCAGGCCCGGCCCCCGGAGATGGAGATTCACGGGTGGCGGGCCCACCAGGCCGAGAAGGAGAGGGAGTGCCGGGAGCGGGCGGAGACGGAGAAGCGAATCTGGAAATCGGTGCTGCAGTTGGACGAGATGCACGAGGCGTACGAGAAGCTTCTGAAGGACGCGGAGAAGCGGTTGGTGAAAATGTACGAGTCGAAGGAAGATGGTGATGGCGATGTTGTTGACGACGAAGTGAATGAAGAGGTTGTGGGAATTCTGCAAGAGGCCTATGGCAAGGGAATGGAACACGTCAATCTTTCTGGACGCCAATTGAAGCTCTTGCCTGAAGCATTTGGTCGAATTCCTGGCTTGCTCGTCTTTGATCTTTCTGCCAATCAACTCTCGGCTATTCCTGATTCAATAGCTGGATTGCAAAACCTTGAGGAGCTTAATCTTTCTTCAAATCTTTTGGAGTCTCTGCCGGATTCAATTGGGTTATTACAAAAGTTGAAATTGCTCAATGTCTCTGGAAACAAGCTGACTGCGCTTCCTGATACCATCTGTCACTGCAGGTCATTGGTTGAGTTGGATGTAAGCTTTAACAATCTATCATATTTGCCAACAAACATTGGATATGAATTACCGAACTTGCAGAAACTCATGATTCAGTTGAACAAGATTCGATCTCTTCCCTCATCTATCTGTGAGTTGAAGTCCTTGCGCTATTTAGATGCTCATTTTAATGAGCTGCATGGGCTTCCCATTGCAATTGGGAGACTGACTAATCTTGAGGTTCTCAACCTGAGCAGTAACTTTAGTGACCTCAAAGAACTACCAGAGACATTTGGTGATTTGACTAACCTCAGGGAATTGGATCTCAGCAATAATCAGATCCATGCACTTCCTGATACATTTGGGCGCCTTGATAATTTGACCAAGCTAAACTTGGAGCAGAATCCTCTTGAATTGCCACCAATGGAGATTGTAAATCAAGGGGTTGAAGCCGTAAAGAGCTTTATGGCCAAGAGGTGGCTTGATCTATTGTTGGAGGAGGAGAGGAAAAACAGCCAAGAAATGCAAGAACAAGAACAGGGTGGTTGGTTAACACGAAGCACCTCCTGGTTGAAGAATGTTTCTGGAAATGTAATTGGGTATATTGGAACTGCCGGTGGAACTCCCAGAGATGCATATCTTGATCAGCAGCTATGA 1518 0.5053 MDPNPRTFPILSYVISRLPSLTPRPPAAANSDSDHFDLEQPRTPEIVGQMPHLADPDLMASMGRSVSQVVQARTVLNLIGERPTHEEVDSARARLAEIEAQLSHELEEIVLQARPPEMEIHGWRAHQAEKERECRERAETEKRIWKSVLQLDEMHEAYEKLLKDAEKRLVKMYESKEDGDGDVVDDEVNEEVVGILQEAYGKGMEHVNLSGRQLKLLPEAFGRIPGLLVFDLSANQLSAIPDSIAGLQNLEELNLSSNLLESLPDSIGLLQKLKLLNVSGNKLTALPDTICHCRSLVELDVSFNNLSYLPTNIGYELPNLQKLMIQLNKIRSLPSSICELKSLRYLDAHFNELHGLPIAIGRLTNLEVLNLSSNFSDLKELPETFGDLTNLRELDLSNNQIHALPDTFGRLDNLTKLNLEQNPLELPPMEIVNQGVEAVKSFMAKRWLDLLLEEERKNSQEMQEQEQGGWLTRSTSWLKNVSGNVIGYIGTAGGTPRDAYLDQQL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01308 505 Gene3D Ribonuclease Inhibitor 321 444 IPR032675 -
Vimu10g01308 505 FunFam Plant intracellular Ras-group-related LRR protein 9 130 308 - -
Vimu10g01308 505 Coils Coil 148 175 - -
Vimu10g01308 505 Coils Coil 88 108 - -
Vimu10g01308 505 Gene3D Ribonuclease Inhibitor 136 320 IPR032675 -
Vimu10g01308 505 ProSiteProfiles Leucine-rich repeat profile. 390 411 IPR001611 GO:0005515
Vimu10g01308 505 SMART LRR_bac_2 247 266 - -
Vimu10g01308 505 SMART LRR_bac_2 340 359 - -
Vimu10g01308 505 SMART LRR_bac_2 317 336 - -
Vimu10g01308 505 SMART LRR_bac_2 270 289 - -
Vimu10g01308 505 SMART LRR_bac_2 363 384 - -
Vimu10g01308 505 SMART LRR_bac_2 388 407 - -
Vimu10g01308 505 SMART LRR_bac_2 293 312 - -
Vimu10g01308 505 PANTHER DISCS LARGE 206 444 - -
Vimu10g01308 505 Pfam Leucine rich repeat 365 424 IPR001611 GO:0005515
Vimu10g01308 505 Pfam Leucine rich repeat 249 306 IPR001611 GO:0005515
Vimu10g01308 505 SUPERFAMILY L domain-like 202 429 - -
Vimu10g01308 505 ProSiteProfiles Leucine-rich repeat profile. 249 270 IPR001611 GO:0005515
Vimu10g01308 505 SMART LRR_typ_2 247 269 IPR003591 -
Vimu10g01308 505 SMART LRR_typ_2 363 387 IPR003591 -
Vimu10g01308 505 SMART LRR_typ_2 317 340 IPR003591 -
Vimu10g01308 505 SMART LRR_typ_2 388 411 IPR003591 -
Vimu10g01308 505 SMART LRR_typ_2 224 246 IPR003591 -
Vimu10g01308 505 SMART LRR_typ_2 270 293 IPR003591 -
Vimu10g01308 505 SMART LRR_typ_2 294 316 IPR003591 -
Vimu10g01308 505 FunFam Plant intracellular Ras-group-related LRR protein 2 312 485 - -
Vimu10g01308 505 PRINTS Leucine-rich repeat signature 388 401 - -
Vimu10g01308 505 PRINTS Leucine-rich repeat signature 250 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01308 Vimu-Chr10 13673768 13676653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01308 235 427 Receptor kinase-like Gene Family AT5G25910 31.579 1.71e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01308 - - gmx:100803823 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01308 10 13673768 13676653 Vimu10g01308 10 13673768 13676653 ECH
Vimu7g00611 7 6159888 6162216 Vimu10g01308 10 13673768 13676653 PCT