Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00572 TTGATCTCTCTTTTTCACATCTTCCATTTGCATTGGTATAATATTAAGCAACGCAAGATGGAAATGAAAAAGGTTTTGTGGGCTGTTTTATTGTTTGGTTTTGTTCTTGGAATGGGCGAGAGTTTTGATTTTAACGAGAAGGAGCTAGAATCGGAGCAAGGGTTGTGGGATTTGTACGAGAGATGGAGAAGCCACCACACGGTTTCACGAAGCTTCGATGAGAAGCAGAAGCGCTTCAACGTGTTCAAAGCCAACGTGATGAATGTCCACAACGCGAATAAAATGGACAAGCCTTACAAGCTGAAGTTGAACAGGTTTGCTGACATGACCAACCATGAATTCACGACCACCTATGCTAACTCGAAGGTAGGTCACCACAGAATGTTCCGAGGCATGCCACTTGGGAACGGTACTTTCATGTATGAGAACGTTGATAAGGTTCCTTCTTCGGTGGATTGGAGGAAGAAAGGTGCTGTCACTGATGTAAAGGATCAAGGCAAATGTGGTAGTTGTTGGGCCTTTTCAACGGTTGCAGCCGTTGAAGGTATTAACCAGATAAAAACAAATAAGCTGGTGTCCTTGTCTGAGCAAGAACTTGTAGATTGCGACACTAAAGAGAATGCAGGATGTAATGGTGGGCTAATGGAAAGTGCATTTGATTTCATCAAACAACATGGTATAACTACAGAAAGCAATTACCCTTATGAAGCAAGAGATGGAACTTGTGATGCATCAAAGGTGAAGAAACCTGCAGTGTCAATCGATGGGCATGAAACTGTTCCAGTGAACAATGAAGCTGCATTGCTCAAAGCTGTTGCTCATCAACCTGTATCAGTAGCCATTGATGCTGGCGGATTTGGCTTCCAGTTCTACTCAGAGGGAGTATTTACGGGATTGTGTGGCACTGATTTGAATCATGGGGTAGCAATTGTGGGGTATGGAACAACTCGAGATGGAACAAAGTATTGGACAGTGAAAAACTCGTGGGGATCCGAATGGGGAGAAAATGGTTACATTAGAATGGAAAGAGATGTATTTAACAAGGGAGGTTTATGCGGCATAGCAATGGAGGCCTCTTATCCAATCAAAAGCTCCTCCTCCAAATCAATGGAACATTCTTCGTCTCTCAAGGACGAGCTTTGA 1143 0.4331 MISLFHIFHLHWYNIKQRKMEMKKVLWAVLLFGFVLGMGESFDFNEKELESEQGLWDLYERWRSHHTVSRSFDEKQKRFNVFKANVMNVHNANKMDKPYKLKLNRFADMTNHEFTTTYANSKVGHHRMFRGMPLGNGTFMYENVDKVPSSVDWRKKGAVTDVKDQGKCGSCWAFSTVAAVEGINQIKTNKLVSLSEQELVDCDTKENAGCNGGLMESAFDFIKQHGITTESNYPYEARDGTCDASKVKKPAVSIDGHETVPVNNEAALLKAVAHQPVSVAIDAGGFGFQFYSEGVFTGLCGTDLNHGVAIVGYGTTRDGTKYWTVKNSWGSEWGENGYIRMERDVFNKGGLCGIAMEASYPIKSSSSKSMEHSSSLKDEL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00572 380 Gene3D Cysteine proteinases 36 364 - -
Vimu7g00572 380 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 165 176 IPR000169 -
Vimu7g00572 380 PRINTS Papain cysteine protease (C1) family signature 306 316 IPR000668 GO:0006508|GO:0008234
Vimu7g00572 380 PRINTS Papain cysteine protease (C1) family signature 322 328 IPR000668 GO:0006508|GO:0008234
Vimu7g00572 380 PRINTS Papain cysteine protease (C1) family signature 165 180 IPR000668 GO:0006508|GO:0008234
Vimu7g00572 380 CDD Peptidase_C1A 148 361 IPR039417 -
Vimu7g00572 380 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 304 314 IPR025660 -
Vimu7g00572 380 SUPERFAMILY Cysteine proteinases 56 362 IPR038765 -
Vimu7g00572 380 Pfam Papain family cysteine protease 147 362 IPR000668 GO:0006508|GO:0008234
Vimu7g00572 380 SMART pept_c1 147 362 IPR000668 GO:0006508|GO:0008234
Vimu7g00572 380 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 322 341 IPR025661 -
Vimu7g00572 380 SMART Inhibitor_I29_2 59 114 IPR013201 -
Vimu7g00572 380 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 52 360 IPR013128 GO:0008234
Vimu7g00572 380 Pfam Cathepsin propeptide inhibitor domain (I29) 59 114 IPR013201 -
Vimu7g00572 380 FunFam Senescence-specific cysteine protease SAG39 39 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00572 Vimu-Chr7 5821653 5823639 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00572 K16292 - gmx:100806581 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00572 7 5821653 5823639 Vimu7g00572 7 5821653 5823639 ECH
Vimu7g00572 7 5821653 5823639 Vimu10g01360 10 14314253 14315923 PCT