Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01360 TTGTTCCCTTCCCTTCCCATCTTCCATTTATTGATTCCAAACACAAACATGGCAATGAAGAAGCTCTTGTGGGTTGTTCTGTCCCTTTCTTTGGTTCTTGGAGTGGCCAACAGCTTTGATTTTCATGAGAAGGATTTGGAGTCCGAGGAAAGCTTGTGGGACTTGTACGAGAGATGGAGGAGTCACCACACGGTTTCGCGAAGCCTCGGTGAGAAGCACAAACGGTTTAACGTGTTCAAAGCAAATGTTATGCATGTGCATAACACTAACAAGATGGATAAGCCTTATAAGCTGAAACTGAACAAGTTCGCTGACATGACCAATCATGAATTCAGGAGTACCTATGCAGGCTCAAAGGTTAATCACCACAAAATGTTCCGAGGCTCGCAACATGGGAGCGGTACCTTCATGTATGAGAAGGTTGGGAGTGTTCCTGCTTCAGTGGATTGGAGGAAGAAAGGTGCTGTCACTGATGTGAAAGATCAGGGCCAATGTGGTAGCTGCTGGGCGTTTTCAACTATAGTAGCTGTTGAAGGCATTAACCAAATCAAGACAAATAAGTTGGTGTCATTGTCTGAACAAGAGTTGGTCGATTGTGACAAAGAAGAAAACCAAGGATGTAATGGTGGGTTGATGGAATCTGCTTTTGAGTTCATCAAACAGAAGGGAGGCATAACAACAGAAAGCAATTATCCATACACAGCACAAGAAGGAACGTGTGACGAATCAAAGGTGAATGACCTAGCTGTGTCAATTGATGGTCATGAAAATGTCCCTGTGAACGATGAAAATGCACTGCTCAAAGCTGTCGCCAACCAACCTGTTTCTGTAGCCATTGATGCTGGGGGGTCTGATTTCCAGTTCTACTCTGAGGGAGTGTTTACGGGTGACTGTAACACAGATCTAAATCATGGTGTAGCAATTGTGGGATATGGAACAACGGTTGATGGAACTAATTATTGGATAGTGAGAAACTCTTGGGGACCAGAATGGGGAGAACAGGGTTACATCAGAATGCAAAGGAACATATCTAAAAAGGAGGGACTTTGTGGCATAGCCATGATGGCTTCCTATCCAATCAAAAATTCCTCTGACAATCCAACAGGATCTTTGTCATCTCCCAAAGATGAACTTTGA 1137 0.438 MFPSLPIFHLLIPNTNMAMKKLLWVVLSLSLVLGVANSFDFHEKDLESEESLWDLYERWRSHHTVSRSLGEKHKRFNVFKANVMHVHNTNKMDKPYKLKLNKFADMTNHEFRSTYAGSKVNHHKMFRGSQHGSGTFMYEKVGSVPASVDWRKKGAVTDVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDKEENQGCNGGLMESAFEFIKQKGGITTESNYPYTAQEGTCDESKVNDLAVSIDGHENVPVNDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCNTDLNHGVAIVGYGTTVDGTNYWIVRNSWGPEWGEQGYIRMQRNISKKEGLCGIAMMASYPIKNSSDNPTGSLSSPKDEL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01360 378 FunFam Senescence-specific cysteine protease SAG39 36 361 - -
Vimu10g01360 378 Pfam Cathepsin propeptide inhibitor domain (I29) 56 111 IPR013201 -
Vimu10g01360 378 Pfam Papain family cysteine protease 144 360 IPR000668 GO:0006508|GO:0008234
Vimu10g01360 378 Gene3D Cysteine proteinases 30 362 - -
Vimu10g01360 378 SMART pept_c1 144 360 IPR000668 GO:0006508|GO:0008234
Vimu10g01360 378 PRINTS Papain cysteine protease (C1) family signature 320 326 IPR000668 GO:0006508|GO:0008234
Vimu10g01360 378 PRINTS Papain cysteine protease (C1) family signature 162 177 IPR000668 GO:0006508|GO:0008234
Vimu10g01360 378 PRINTS Papain cysteine protease (C1) family signature 304 314 IPR000668 GO:0006508|GO:0008234
Vimu10g01360 378 SUPERFAMILY Cysteine proteinases 49 360 IPR038765 -
Vimu10g01360 378 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 320 339 IPR025661 -
Vimu10g01360 378 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 302 312 IPR025660 -
Vimu10g01360 378 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 162 173 IPR000169 -
Vimu10g01360 378 SMART Inhibitor_I29_2 56 111 IPR013201 -
Vimu10g01360 378 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 47 359 IPR013128 GO:0008234
Vimu10g01360 378 CDD Peptidase_C1A 145 359 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01360 Vimu-Chr10 14314253 14315923 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01360 K16292 - gmx:547487 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01360 10 14314253 14315923 Vimu10g01360 10 14314253 14315923 ECH
Vimu7g00572 7 5821653 5823639 Vimu10g01360 10 14314253 14315923 PCT