Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04563 ATGGCAGGGGATGTTAAGAAACTGCTTGCAAACAAAACTGGTTTGCTGCCTGAAGAGCAGCAACTCTTCTTCCGAGGAGAAGAAAAGTACAATGAAGAGACTTTGTACGTAGAAGGTGTGCTGGACAAATCAAATATTTTGCTTTTGGATAATACTGCTAGTGAAGAGTCGAAAATTGAGGAAATTAGAAAACATAATGACATGTTAAAGGCTTTTGAAGCTGTTGCTGAAGTCAGAGCAGAGGTGGACGAGCTTGCTGAGAGGGTATTTGTATTGAAAGTGGCTGCAGATGGAGGGACCAGGGTTTCTGACAAAGAGTTTTCGACGTGCACGGAGTTGCTTATGAGGCAATTGCTGAAGCTGGATGGTATTCAGGCTGAAGGTGAAGCAAAGCTGCAGAGAAAAGCTGAGGTGCATCGTGTGCAGAACTTTGTTGATAGTTTAGATGCTCTGAAGGAAAGAAACTCGAAACCGGTACCCACCACTGTTAAAACTGTCTCTGTGGGAACCCAGTGGGAGCACTTTGACTCTGGAATGGGGAGCTTGAATGCCCCAACATCATCTGCAAATTTCACTCAAGATTGGGAGCGGCATGATTAG 600 0.4467 MAGDVKKLLANKTGLLPEEQQLFFRGEEKYNEETLYVEGVLDKSNILLLDNTASEESKIEEIRKHNDMLKAFEAVAEVRAEVDELAERVFVLKVAADGGTRVSDKEFSTCTELLMRQLLKLDGIQAEGEAKLQRKAEVHRVQNFVDSLDALKERNSKPVPTTVKTVSVGTQWEHFDSGMGSLNAPTSSANFTQDWERHD 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04563 199 Gene3D - 1 50 - -
Vimu6g04563 199 PANTHER BCL2-ASSOCIATED ATHANOGENE 3 176 IPR039773 GO:0051087
Vimu6g04563 199 MobiDBLite consensus disorder prediction 177 199 - -
Vimu6g04563 199 Coils Coil 68 88 - -
Vimu6g04563 199 SUPERFAMILY BAG domain 53 156 IPR036533 GO:0051087
Vimu6g04563 199 SMART BAG_1 74 152 IPR003103 GO:0051087
Vimu6g04563 199 SUPERFAMILY Ubiquitin-like 3 52 IPR029071 -
Vimu6g04563 199 Gene3D BAG domain 51 156 IPR036533 GO:0051087
Vimu6g04563 199 MobiDBLite consensus disorder prediction 177 192 - -
Vimu6g04563 199 ProSiteProfiles BAG domain profile. 74 152 IPR003103 GO:0051087
Vimu6g04563 199 Pfam BAG domain 76 150 IPR003103 GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04563 Vimu-Chr6 51412169 51415433 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04563 - - vra:106753373 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04563 6 51412169 51415433 Vimu6g04563 6 51412169 51415433 ECH
Vimu6g04563 6 51412169 51415433 Vimu9g01002 9 16836148 16842196 PCT