Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04560 ATGAGAATTTCCCAATGTCCTTTCGTTTTCATCATATTATGCTACTCCTTCTGGATATATCACACTGTTTATTTCACCGGGGTTTCTGGTCAGATTGTTGAAGATCAACAACAGTCATTGCTAAAATTGAAGAACAGCCTAATATTCGACCAAGAAAAATCTCACAAACTTGTGTTCTGGAATTCAAGCACGGATTGCTGTAAGTGGATAGGTGTAACCTGTGATGAGGAGGGACATGTTATTGGCCTTGACCTGAATGGAGAATCAATCAATGGTGGATTTGACAATTCAAGTACTCTTTTCAACCTGCAAAGTCTCAGGATACTGAATTTGTCCGTTAATAACTTCAGTTCTCAGATACCATCTGGATTCAGCAGGTTGAAGAACTTAACATATCTGAATTTGTCTCATGCTGGTTTTGTGGGCCATGTTCCAACAGAGATTTCTTCCCTGACAAGGTTGGTATCTCTTGATATCTCTTCTCTTTCCTTTTTGTTTGGGAAACTGCTGAAACTTGAAAAAACAGATCTGCAAATGCTATTCAAAAACTTCACCATGATTAGACAATTGTATATGGATGGGGTAAGTGTATCAGCTGAGGGAAATGAATGGAGCAATGCTTTGTTGCAGCTACATAGCCTGCAGGAACTGAGCATGTCCAACTGCAATCTTTCAGGACCCCTTGATCATTCCCTGACAAGACTTCAAAACCTATCAATCATTCGACTTGATCAAAACAATTTATCATCCCCGGTGCCAGAAACCTTTGCTGGTTTTCCAAATTTAACAACCCTTCACCTTAGTTCCTGTGAATTGACAGGAATGTTTCCTGATAAGATCTTTCAGTTAGCAACATTGTCTGACATAGACTTGTCATTCAACTATGATCTTAATGGATCTTTGCCTGAATTGCCTCCGAATGGTTCCCTTCAGAAATTAATTGTGAGTCACACAAGGTTCTCAGGAGCATTGCCAGCTTCTATAGGTAATCTTAGGCAGTTATCCATCTTAGATCTTTCTAATTGCCATTTTAACGGAACACTACCCAGTTCAATGTCAGGACTAAAGAAACTCACTTCTCTACTCTTGTCGTTAAATAACTTCATTGGTCAAATTCCGTCCCTGAATATGTCCAGGAATCTTACGCATTTAGACTTATCACACAATAAATTCACAGGTTCAATCACTTATGTTCACTTGGAAGGCCTAAGAGAGCTGGTCCAAATTGATTTACAGGACAACTTACTTGATGGAAACATCCCTTCTTCTCTTTTTGCACTTCCATTGGTACAAAGCATTCAACTTTCCAACAACCATTTCCATGGCCAGCTTGATGAATTTTCAAATATCTCATCCTCCGTCTTAGAGATCCTTGATTTAAGTAGTAATGATCTAGAAGGGCCCATTCCTCTATCTATTTTTAATCTCAGATCACTGAATGTCCTCAAACTATCTTTAAACAAGTTACATGGCACAATAAAGCTAGATGTATTTCAGGGACTTAAAAATCTAACTACACTAGCCCTTTCACACAACAACTTGTCAGTGGAGACAAATGAGACGGATAAAGGCCTTATATCTTCATTCCACAATATGAGCAGTATAGAGTTGGCTTCCTGCAATCTGACACAGTTCCCCAGTTTCTTGAGAAACCATTCCAGAATAACCACTTTAGACCTCTCAAGAAACCATATTAGAGGATCGATACCAATATGGATATGGCAACTTGACTCTCTTGTTCAATTAAATCTTTCTCACAATTTGCTCAGCAGTTTAGAAGGATCTGTGCAGAACACTGGTTCCAGTCTGAGGCTCGTTGACCTTCATGCTAACCAACTCCAAGGGAAGCTTCAAATATTTCCAGTGTATGCCACTTATTTAGACTATTCATGCAATAATTTCAGTTTCGCTATTCCGTCAGATGTTGCTACTCGTCTGTCGGGCATAATTTTTCTCTCTCTGTCCAAAAATAATTTATCTGGGACTATTCCTCAATTCCTGTGCAATAGTTCACAGCTGATAGTTCTGGATGTTTCTTATAATAACTTCGGTTGGACAATTCCAGAGTGCTTAACACAGAGTGTGACAATTAAGGTATTAAATCTGCAACATAACAAGTTTAATGGCAGCATTCCAGATAAATTTCCAGTATCTTGTGCTCTGAAGACTTTGGATCTCAATAGTAATCTATTGAAGGGGCCAATTCCTAAATCCCTACAAAATTGCTCATCATTAGAGGTGTTGGATCTTGGAAACAATGAGGTAGATGATGGATTTCCATACTTCCTAAATTCAATATCCACAATCCGTGTTCTGGTTTTGAGGGGAAACAAATTTCATGGTCACATTGAATGTACTGATAACAGAACTTGGCCAATGCTTCAAATTTTTGATGTGGCTTTCAACAAATTTAGTGGTTTACTTCCAGGAAAATGTTTCAAAACATGGAAGGCAATGAAGCTTGACAAATATCATCATGTATCAAAGTTCAATCACATAGGATCTGAGGTCCTTACATTTGGTGGTATATATTATCAGGATTCTGTGACACTTACAATCAAAGGTTTGGAGTTGGAGTTTGTTAAAGTCCTAACTCTCGTCACATCTGTTGACTTCTCATCCAACAAATTTAGTGGAACAATACCTGAAGATCTTATGGATTTTACTGGACTTTTTGCCCTCAACTTGTCTCATAATGGTTTAACAGGCCAAATTCCTTCATCTATAGGTAATTTAAAAGAGCTCGAGTCATTGGACCTGTCATGCAACCATTTGCATGGAGAAATTCCAACACAGGTTGCAAGTTTAAATTTCCTCTCATACCTAAACCTTTCCTATAATTATCTGGAAGGGAAAATCCCTACAGGTACCCAGCTTCAAACGTTTGATGCATCTTCCTATGCTGGTAATGCAGGTTTATGTGGAATTCCTTCTTCGAAATTGTGCCTTGATAGGCGCAATTCAAAATCTGAAGTATATACAGATTCTGGTGTTAAATTTGACTGGATATTTGTATCAATTGGATTGGGTTTTGGGGTTGGAGCAGGAATGGTCGTGGCTCCATCATTATTTATGGAGAGACTGAAAAAATGGAGCAACCACAAAATCGATAAAGCTCTCATCATCATTCTTCCAGTGTTTGGTTTGACTTGGATACCCATTGATGATGATGACGATGATGATACAGAGGAAGATACTAAGGAAAACCACCCAGATATCAAAGAGGATTATGATTACAATGAGATGCATAATAACCTGGTCCATCAAAGGTTTCGAGGGCGGTACTGTGCCTTATGCTCCAAGCTTCATATCAGTAACAAGAAGGTAATCCATGATCCCAGGTGTACATGTTTCCCATCACCTCCCATTTCAACATCAACTTATCCAGATTCATATTCTTCTCATTCACATTCAGGATGA 3420 0.3854 MRISQCPFVFIILCYSFWIYHTVYFTGVSGQIVEDQQQSLLKLKNSLIFDQEKSHKLVFWNSSTDCCKWIGVTCDEEGHVIGLDLNGESINGGFDNSSTLFNLQSLRILNLSVNNFSSQIPSGFSRLKNLTYLNLSHAGFVGHVPTEISSLTRLVSLDISSLSFLFGKLLKLEKTDLQMLFKNFTMIRQLYMDGVSVSAEGNEWSNALLQLHSLQELSMSNCNLSGPLDHSLTRLQNLSIIRLDQNNLSSPVPETFAGFPNLTTLHLSSCELTGMFPDKIFQLATLSDIDLSFNYDLNGSLPELPPNGSLQKLIVSHTRFSGALPASIGNLRQLSILDLSNCHFNGTLPSSMSGLKKLTSLLLSLNNFIGQIPSLNMSRNLTHLDLSHNKFTGSITYVHLEGLRELVQIDLQDNLLDGNIPSSLFALPLVQSIQLSNNHFHGQLDEFSNISSSVLEILDLSSNDLEGPIPLSIFNLRSLNVLKLSLNKLHGTIKLDVFQGLKNLTTLALSHNNLSVETNETDKGLISSFHNMSSIELASCNLTQFPSFLRNHSRITTLDLSRNHIRGSIPIWIWQLDSLVQLNLSHNLLSSLEGSVQNTGSSLRLVDLHANQLQGKLQIFPVYATYLDYSCNNFSFAIPSDVATRLSGIIFLSLSKNNLSGTIPQFLCNSSQLIVLDVSYNNFGWTIPECLTQSVTIKVLNLQHNKFNGSIPDKFPVSCALKTLDLNSNLLKGPIPKSLQNCSSLEVLDLGNNEVDDGFPYFLNSISTIRVLVLRGNKFHGHIECTDNRTWPMLQIFDVAFNKFSGLLPGKCFKTWKAMKLDKYHHVSKFNHIGSEVLTFGGIYYQDSVTLTIKGLELEFVKVLTLVTSVDFSSNKFSGTIPEDLMDFTGLFALNLSHNGLTGQIPSSIGNLKELESLDLSCNHLHGEIPTQVASLNFLSYLNLSYNYLEGKIPTGTQLQTFDASSYAGNAGLCGIPSSKLCLDRRNSKSEVYTDSGVKFDWIFVSIGLGFGVGAGMVVAPSLFMERLKKWSNHKIDKALIIILPVFGLTWIPIDDDDDDDTEEDTKENHPDIKEDYDYNEMHNNLVHQRFRGRYCALCSKLHISNKKVIHDPRCTCFPSPPISTSTYPDSYSSHSHSG 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04560 1139 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 366 982 IPR046956 -
Vimu6g04560 1139 Gene3D Ribonuclease Inhibitor 33 303 IPR032675 -
Vimu6g04560 1139 Gene3D Ribonuclease Inhibitor 377 621 IPR032675 -
Vimu6g04560 1139 FunFam Tyrosine-sulfated glycopeptide receptor 1 427 715 - -
Vimu6g04560 1139 SUPERFAMILY L domain-like 277 615 - -
Vimu6g04560 1139 Pfam Leucine rich repeat N-terminal domain 34 75 IPR013210 -
Vimu6g04560 1139 Pfam Leucine Rich Repeat 721 742 IPR001611 GO:0005515
Vimu6g04560 1139 PRINTS Leucine-rich repeat signature 381 394 - -
Vimu6g04560 1139 PRINTS Leucine-rich repeat signature 912 925 - -
Vimu6g04560 1139 SUPERFAMILY L domain-like 35 302 - -
Vimu6g04560 1139 Pfam Leucine Rich repeat 378 393 IPR001611 GO:0005515
Vimu6g04560 1139 Gene3D Ribonuclease Inhibitor 623 991 IPR032675 -
Vimu6g04560 1139 SMART LRR_typ_2 912 936 IPR003591 -
Vimu6g04560 1139 SMART LRR_typ_2 331 355 IPR003591 -
Vimu6g04560 1139 SMART LRR_typ_2 259 283 IPR003591 -
Vimu6g04560 1139 SMART LRR_typ_2 476 500 IPR003591 -
Vimu6g04560 1139 SMART LRR_typ_2 501 524 IPR003591 -
Vimu6g04560 1139 SMART LRR_typ_2 235 258 IPR003591 -
Vimu6g04560 1139 SMART LRR_typ_2 403 427 IPR003591 -
Vimu6g04560 1139 SMART LRR_typ_2 103 127 IPR003591 -
Vimu6g04560 1139 SMART LRR_typ_2 576 598 IPR003591 -
Vimu6g04560 1139 SUPERFAMILY L domain-like 606 978 - -
Vimu6g04560 1139 FunFam Tyrosine-sulfated glycopeptide receptor 1 741 987 - -
Vimu6g04560 1139 Pfam Leucine rich repeat 237 294 IPR001611 GO:0005515
Vimu6g04560 1139 Pfam Leucine rich repeat 455 514 IPR001611 GO:0005515
Vimu6g04560 1139 Pfam Leucine rich repeat 532 589 IPR001611 GO:0005515
Vimu6g04560 1139 Gene3D Ribonuclease Inhibitor 304 376 IPR032675 -
Vimu6g04560 1139 ProSiteProfiles Leucine-rich repeat profile. 578 599 IPR001611 GO:0005515
Vimu6g04560 1139 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 301 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04560 Vimu-Chr6 51375860 51379279 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04560 10 1020 Receptor kinase-like Gene Family AT1G47890 34.552 6.27e-148 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04560 - - vum:124835395 1681.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04560 6 51375860 51379279 Vimu9g00991 9 16622027 16625955 PCT