Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04447 ATGGATTCCCTACGCCCTTCCGCAACCAAAGGAGCAGAAGAAGTGTTGCAAGCTCGACCTCACAGAAACGGAGAGGGGATAAGGTCATCTATTGTTCTCACACACTCCCCTTTACGTTCCATGCAACAGAATGAAGGAGTTGGCAAAGGAAATCAAGGAGTCCTAGTTGCTACATTTAATTCCACTGAAGAAGAAATAATTTCTTGGTTTAAAGGGAAGCTTCACGAGTTCAAGATTCTCCAGTCGGATGGAATGAGTAGGCAATTCCATGCTCGGATTCTGGGATTTTTCAGCCATGAATGTGAGTCTCAAATTTTCATGACTTGGGAGTACCCTGCAGGCTCATTTGAAGCAAGGATCCTGAAGCCACTTCTTGATAGGAGGTTCAGAGTTCAAGAAGTGGCCCCAGACTTGCCATTTCTCTTCAAGGGAACTCCAGCTGAAGCATGGCCGAATGAGTTGATGAAAGGGAAGAAGGACCCTGGTAAGATTTCTCTGTTTCAGAACCTATCCAACTTGATGAGATTTGCAGTTCTATACCAATATGGTGGTGTGTACCTAGACACGGATTTTATAGTCTTGAAACCTATATCTGTCTTGAGGAATATTATTGGAGCACAAAGCATGTACTCTGGGAATAAGAACTGGACTAGACTTAACAATGCAGTCCTGATATTTGACATGAATCATCCACTTCTTCTCAGATTCATTAATGAATTTGTGTTAACTTTTAATGGGAACAAATGGGGGCACAATGGTCCCTACCTGGTTTCCAGAGTGGTTGAGAGACTGGGGGAAAGGCCAGGTTTCAACCTTCCAATCTTGCCTCGTTTGGCCTTTTATCCAGAAGATTTGAAAAAGATTGGTGGTCTCTTTAGGAAGCCCAAAACTAGAGGTAAATCAAAATGGGTTGAAGCGAAACTGCTTCAGCTAAGTAGTGAGAGTTATGGGGTTCATTTATGGAACAAAGAAAGTAGGAATTTGAAGATTGAAGATGGAAGTGTGGTAGCTAGACTCATATCTGATCGTTGTATCATTTGCAAGTATCTGTAA 1053 0.4236 MDSLRPSATKGAEEVLQARPHRNGEGIRSSIVLTHSPLRSMQQNEGVGKGNQGVLVATFNSTEEEIISWFKGKLHEFKILQSDGMSRQFHARILGFFSHECESQIFMTWEYPAGSFEARILKPLLDRRFRVQEVAPDLPFLFKGTPAEAWPNELMKGKKDPGKISLFQNLSNLMRFAVLYQYGGVYLDTDFIVLKPISVLRNIIGAQSMYSGNKNWTRLNNAVLIFDMNHPLLLRFINEFVLTFNGNKWGHNGPYLVSRVVERLGERPGFNLPILPRLAFYPEDLKKIGGLFRKPKTRGKSKWVEAKLLQLSSESYGVHLWNKESRNLKIEDGSVVARLISDRCIICKYL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04447 350 PANTHER ALPHA 1,4-GLYCOSYLTRANSFERASE FAMILY PROTEIN 44 119 IPR044789 -
Vimu6g04447 350 Pfam Glycosyltransferase sugar-binding region containing DXD motif 124 208 IPR007577 -
Vimu6g04447 350 Gene3D - 115 271 - -
Vimu6g04447 350 Pfam Alpha 1,4-glycosyltransferase conserved region 226 347 IPR007652 -
Vimu6g04447 350 SUPERFAMILY Nucleotide-diphospho-sugar transferases 87 347 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04447 Vimu-Chr6 49905769 49910914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04447 61 347 Glycosyltransferase AT2G38150 47.335 2.23e-101 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04447 K01988 - gmx:100812965 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04447 6 49905769 49910914 Vimu6g04447 6 49905769 49910914 ECH
Vimu6g04447 6 49905769 49910914 Vimu9g01241 9 20279644 20282689 PCT