Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04028 ATAACTCAAAATTCTCATGATCCAAAGTTTGGCAATCAGGAAAATGAAGAAAATGTCTCAGATACAGCTTATTCTGACAAAACTCAGAAAGGTCAACCTGGTTCGAAGATGATACATCCAAATGAGCCCGAGAAAAATTCATATCCAGTTTCTTCTGCTGACCTACCCCATTCAAAACCAAGAGTTCACTCAGAGGATCCATTTGGAAAGGGATCAGTGAGATCCACCTATGAGGATGATGGTGATGCTAAACATTTCACTGAGTCTCCAGCTCGCCATGACAATGGTAGCCATGTGAGTGGCACTGATTCTGCCCAACGAGGCCAGGGAGTAGGTTCTGCTGACAACGGTAGAAAACCTTCAAGACAAACTATTGGATCTGAACACAACATTGACCGTTCACCCCTTCATCGCCAGGCAAAAACCCCTGGCAGGGATAGTCCTTCTTGGGAAGTAAAGAATTCATATGACACCAGCCATCCTGATAAAGGTGCCGCTGTTCCAAAATTTGGTGAGTGGGACGAGAGCAACCCTGCATCAGCTGATGGCTACACTCATATTTTCAACAGAGTGCGGGAGGAGAAGCAGGTGGGGGCTGGACATGTGCCAGGCACACCTAATGCTAGACAATATGGTGTGCGGAATCAGCCTGCTGATGAGAAAGCTCAGGTATGCCAGCAAAACATGTTTAATGTTTAG 699 0.4592 ITQNSHDPKFGNQENEENVSDTAYSDKTQKGQPGSKMIHPNEPEKNSYPVSSADLPHSKPRVHSEDPFGKGSVRSTYEDDGDAKHFTESPARHDNGSHVSGTDSAQRGQGVGSADNGRKPSRQTIGSEHNIDRSPLHRQAKTPGRDSPSWEVKNSYDTSHPDKGAAVPKFGEWDESNPASADGYTHIFNRVREEKQVGAGHVPGTPNARQYGVRNQPADEKAQVCQQNMFNV 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04028 232 MobiDBLite consensus disorder prediction 58 92 - -
Vimu6g04028 232 MobiDBLite consensus disorder prediction 196 221 - -
Vimu6g04028 232 MobiDBLite consensus disorder prediction 93 130 - -
Vimu6g04028 232 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 8 212 IPR040387 -
Vimu6g04028 232 MobiDBLite consensus disorder prediction 1 178 - -
Vimu6g04028 232 MobiDBLite consensus disorder prediction 1 35 - -
Vimu6g04028 232 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 161 196 IPR008700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04028 Vimu-Chr6 40312369 40315793 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04028 K13456 - gmx:100499220 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04028 6 40312369 40315793 Vimu9g01351 9 21790789 21795173 PCT