Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03556 ATGAAAGGAAAGAACAGGAGAAGTGGTGGTGGTGTCCATATGGAATACCTAATTCACATTCAGGAGATAAAGCCTTGGCCCCCTTCGCAATCTCTCAGATCACTTCGTTCTGTGTTGATACAATGGGAGAATGGTGAACGCGCTTCAGGGTCTACTGCTCTTGTTTCCCCTTCTCTCAGTCCTAGTTCTGTTGCTGGTGAAGGAAAGCTAGAATTTAATGAATCATTTAAGCTTCCTGTAACTCTGTCAAGGGATATGTCTATAAGAAATAGTACTGCTGAGGTGTACCAAAAGAATTGCTTGGAGTTCCACTTGTACGAGACTCGAAGAGACAAAACTGTTAAAGGGCAGTTGCTGGGGACTGCCATCATAGACTTGGCAGATTGTGGTGTACTTAGAGAGACTTTGAGCATTCGTACACCATTGAACTGCCAGAGAAACTACAGAAACACGGATCAGCCACTTTTGTTCGTTCAAATTGAGCCTGTTGAAAAGAGTCACCCTAGATCTTCTTTGAAAGACAGCTTGTCAAAGGTGGAGACAAAGGACAATAATGGCAATGAATCTGTATCATCATTGATGAATGGAGAGTATGCTGAGGAAGCTGAGGTTGCCTCTTTTACTGATGATGATGTTTCCTCTCATTCATCTGCGGCTGCAGTCACTACTTCCTCTGATGTTTCCTCTCATTCATCTGTGGCTGCAGTCACTACTTCCTCTGATGTTTCCTCTCATTCATCTGTGGCTGCAGTCACTACTTCCACCGAGTCTAGCGCATGTATGCCTCCTGCACAGGAGGTTGCAGGAAGGTTGCAGCCCCTGGGCAGTGCTGCTTATTCAGTCTTTCCTAGTGGACCAAATGGATCATTGCAAAACAGTGGTACAAATGACAAGGGGTATCATCCCTTGGCCTCAGAGACAAGAGTTGAGAATTTGAATGTGATGGGGCAAGATGCACATGAGACACTGGAGAGGAGTTCTTCTTATGTGTCATCCATGGATGTGTTCTCAGAAGTTGGGAGTCCAGTAAATGGTCATACCTCTAACATAAGCACTCCCCATTATAGATCAGTGACAACCCCAAAGCAGGTTGCTTCTTTTAATGCCGACTCTTCTTCTCCAAGCTTAGAGGAAAATTCTAAGAGCAGGTTCAGAAGCAGTGACCATGAAAATTTGAATCAGGAGGATAGTGAAAAAGTTGCCAATTGCAGAGAAAAGGGTACAGGTGTTCAGATAAACAGTAATGAAAGTGATTTTGACATCTATTCTGGAAACATTACATCTGTAGGTAGAGATTACCTCGACAATAATCCAAGATTTGGTTTGGAAACCAAACACAACTTAAGTGAGAGATCTGAGGAAGTAGATAAAAGTCTGCAGGAGGGGGGAAGTGATACGTACTACAGTTCCATTGAGGATAAGGATGGAAATGAGTCGTTGCATTTTGATGAGCTGTATCTTGTTGAAGATGAACCAGTGGTGCAATATGCGAAAGACCAAGCTTTATTGGGTAGCAATTTATATTTTTTGGGTGGGTCAGATAATGGTATGAAAGGCAGTTTTATGAAAAATGAAAGATTAAAGCATGTTAAGTCTGTAAGGTCATCAGCAGACTCCCTTAGGAGTATTGGGCCACTTGGTAACAATCAGCTCGCTGAGGTAAAGGAAAATGGTGTTAATGGAGATGTCCAAAATAATGGAGGGAGCATTCAAAGCAGTGACAGAAAAGATGCCAAGGTTTATCCAAGGGAAGCCAGAAATGCCATTTTAGACAGCAAGATTGAACAAATGGAAAACAAAATAAAGATGCTTGAAGGAGAGTTAAGAGAAGCTGCTGCTATTGAGGCTGCTTTATTTTCAGTAGTTTCCGAACATGGAAGCTCAATGAGTAAAGTTCATGCCCCAGCTCGGCGCCTTTCCAGGCTGTACCTTCATGCTTGTAAAGAAAATCTTCAAGCAAGAAGGGTTGGGGCGGCTAGAAGTGCTGTTTCAGGATTAGTCCTCGTTGCGAAGGCATGTGGAAATGATGTCCCAAGGTTGACATTTTGGCTGTCTAATTCTATTGTGCTGAGAACAATCATAAGCAAAACTACCAAAGACATGACACCATCTAATACTTCTGGATCTAGAACAAAAAGGAAGAATGGAGAGGTGAAAGTTGGAAAGGTAACACAACCACTAATATGGAGAGGGTTCTCTCCTAGGAAAAACGATTACATGGCTTTTGAAAATGGAGGTATATGTAACTGGGATGACCCAAATGTGTTCACCTCAGCACTGGAAAAGGTAGAAGCTTGGATCTTTTCTCGCATTGTGGAATCTATTTGGTGGCAGTCTTTGACTCCATGTATGCAGAATTCTGATGCCAAGGTCACTCGTAAAGATTCTTCCAAAAACTATACAAATATGTCTGGCTCATGTGACCAAGATCAGGGAAATTTATCGCTAGATATTTGGAAGAATGCTTTTAGAGAAGCCTGTGAAAGGCTATGTCCTATACGCGCTGGAGGGCACGAGTGTGGTTGTTTGTCTGTGCTGCCTAGATTGATAATGGAGCAGTGTGTGGCAAGATTGGATGTTGCTATGTTCAATGCCATTCTTCGGGAGTCTGATGATGGTATTCCAACCGATCCTGTATCTGATCCCATTGGTGATCCCAAGGTTCTCCCCATTCCACCCGGTAAATTGAGCTTTGGATCTGGTGCACAGCTAAAAACTGCGTTCTGGATTTCTCAGATTGGTAACTGGTCTAGATGGCTAACTGACCTATTTGGTCTGGATGACGATGATTCACATGATAGAGATGACGATGACCTTGACAGCAATGATGGAAGTCAAAATTCATCCTTCAAATCCTTCCATCTTCTTAATGCATTAAGCGACCTTCTGATGCTTCCTAAGGATATGTTATTAAATGCATCCATTAGGAAAGAGGTTTGCCCAATGTTTACTGCACCTCTAATCATGAGGATACTAGACAATTTTGTCCCAGATGAGTTTTGTCCTGATCCAATTCCTGATGATGTTTTTGAAGCTCTGGACTCACAGGATGATCTTGATGATGGAAATGAGTCTGTCAACAATTTCCCGTGCAGTGCAACTCCCATTGCATATTCACCTCCACCAGCAACTACCATTACAAGCATTACGGGTGAGATTGGAAGTGAGTCTCAGCTTAGAAGAAGCAAATCTTCCATTGTTAGGAAGTCATACACCAGCGATGATGAGCTCGATGAACTAAATTATCCATTATCTTTAATATTGAATAGTGGCTCCTCACCAGCATCAACAAAGTCCAATTGCAAGTGGAAAGAGAGTCGCGATGAATCTGCCATTAGATTTGAACTTCTTAGAGATGTTTGGATGAACAGTGAATGA 3378 0.4245 MKGKNRRSGGGVHMEYLIHIQEIKPWPPSQSLRSLRSVLIQWENGERASGSTALVSPSLSPSSVAGEGKLEFNESFKLPVTLSRDMSIRNSTAEVYQKNCLEFHLYETRRDKTVKGQLLGTAIIDLADCGVLRETLSIRTPLNCQRNYRNTDQPLLFVQIEPVEKSHPRSSLKDSLSKVETKDNNGNESVSSLMNGEYAEEAEVASFTDDDVSSHSSAAAVTTSSDVSSHSSVAAVTTSSDVSSHSSVAAVTTSTESSACMPPAQEVAGRLQPLGSAAYSVFPSGPNGSLQNSGTNDKGYHPLASETRVENLNVMGQDAHETLERSSSYVSSMDVFSEVGSPVNGHTSNISTPHYRSVTTPKQVASFNADSSSPSLEENSKSRFRSSDHENLNQEDSEKVANCREKGTGVQINSNESDFDIYSGNITSVGRDYLDNNPRFGLETKHNLSERSEEVDKSLQEGGSDTYYSSIEDKDGNESLHFDELYLVEDEPVVQYAKDQALLGSNLYFLGGSDNGMKGSFMKNERLKHVKSVRSSADSLRSIGPLGNNQLAEVKENGVNGDVQNNGGSIQSSDRKDAKVYPREARNAILDSKIEQMENKIKMLEGELREAAAIEAALFSVVSEHGSSMSKVHAPARRLSRLYLHACKENLQARRVGAARSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRTIISKTTKDMTPSNTSGSRTKRKNGEVKVGKVTQPLIWRGFSPRKNDYMAFENGGICNWDDPNVFTSALEKVEAWIFSRIVESIWWQSLTPCMQNSDAKVTRKDSSKNYTNMSGSCDQDQGNLSLDIWKNAFREACERLCPIRAGGHECGCLSVLPRLIMEQCVARLDVAMFNAILRESDDGIPTDPVSDPIGDPKVLPIPPGKLSFGSGAQLKTAFWISQIGNWSRWLTDLFGLDDDDSHDRDDDDLDSNDGSQNSSFKSFHLLNALSDLLMLPKDMLLNASIRKEVCPMFTAPLIMRILDNFVPDEFCPDPIPDDVFEALDSQDDLDDGNESVNNFPCSATPIAYSPPPATTITSITGEIGSESQLRRSKSSIVRKSYTSDDELDELNYPLSLILNSGSSPASTKSNCKWKESRDESAIRFELLRDVWMNSE 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03556 1125 MobiDBLite consensus disorder prediction 558 578 - -
Vimu6g03556 1125 ProSiteProfiles C2 NT-type domain profile. 4 164 IPR019448 -
Vimu6g03556 1125 Coils Coil 587 614 - -
Vimu6g03556 1125 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 577 1122 IPR021827 GO:0005643
Vimu6g03556 1125 MobiDBLite consensus disorder prediction 558 573 - -
Vimu6g03556 1125 MobiDBLite consensus disorder prediction 381 398 - -
Vimu6g03556 1125 MobiDBLite consensus disorder prediction 366 380 - -
Vimu6g03556 1125 MobiDBLite consensus disorder prediction 366 398 - -
Vimu6g03556 1125 MobiDBLite consensus disorder prediction 168 191 - -
Vimu6g03556 1125 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 14 129 IPR019448 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03556 Vimu-Chr6 32794771 32800799 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03556 - - vun:114162716 1839.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03556 6 32794771 32800799 Vimu6g03556 6 32794771 32800799 ECH
Vimu6g03556 6 32794771 32800799 Vimu8g00563 8 12064155 12070447 PCT