Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03462 ATGGGGGTGTATGTAGCAGTTGGGAACGAGCCATTTTTGAAATCCTACAACAATTCGTTCTTGAATATCACCTTTCCTGCTCTGCAGAACATTCAAAATGCCCTTAACGAAGCAGGCCTTGGAGACAGAGTGAAGGCTACAGTACCCTTGAATGCGGATGTGTATCTGTCTCCAGAGAACAATCCTTATCCATCTTCAGGAATATTCAGGCCTGACATCAGTGGTCTCATGACCCAGATGGTGCAGTTTCTCAGCAAGAATGGTGCACCATTTACTGTGAACATTTACCCCTTCTTAAGTCTCTATGGACACGATGATTTTCCATTGAACTACGCCTTCTTTGACGGTGTAGACAATCCGATAAACGATAATGGTATTCTATACACCAATGTCTTTGATGCAAATTTTGATACCTTAGTTGCTGCTCTCAAATCAGTGGGGTTTGGAGACCTTCCTATTTTGGTGGGAGAAGTAGGATGGCCAACAGAAGGAGACAAGAATGCCAATGTTGGCTTAGCTTTGAGGTTCTATAATGGCCTTCTGCCAAGGCTTGCAGGCAATAGAGGCACACCGCGCCGCCCTGGACACATTGAAGTTTATCTTTTTGGACTCATTGATGAGGATGCCAAGAGCATTGCACCAGGAAACTTCGAACGCCACTGGGGAATATTCAGATATGATGGACAACCCAAGTTTCCAATGGACCTTTCTGGTCAGAACCAAGAAAAATATCTGATAGGTGCACAGAATGTGAAGTACCTTGCTCCCAGGTGGTGCATGTTTAATCCTAATGCTAAGGATCTAACCAACCTTCCAGATAACATCAACTATGCTTGCACCTTTGGAGATTGCACTGCACTTGGATACGGATCCTCTTGCAACAACCTTGATGCTAATGGCAATGCCTCGTATGCCTTTAACATGTACTTCCAGGTGCAAAATCAGAACCCCATGGCCTGCAATTTTCAAGGTTTGGCCAAAATTACTACAGACAATATCTCAACACCCACTTGCAATTTTATCGTTCAGATAGTTGGTTCTTCAGCCTCTTCTTTGATTCCCTCACTTGTTGCTATCTTGTTTGTTAGTTTATTCATGATCCTATTTTGGTAA 1113 0.434 MGVYVAVGNEPFLKSYNNSFLNITFPALQNIQNALNEAGLGDRVKATVPLNADVYLSPENNPYPSSGIFRPDISGLMTQMVQFLSKNGAPFTVNIYPFLSLYGHDDFPLNYAFFDGVDNPINDNGILYTNVFDANFDTLVAALKSVGFGDLPILVGEVGWPTEGDKNANVGLALRFYNGLLPRLAGNRGTPRRPGHIEVYLFGLIDEDAKSIAPGNFERHWGIFRYDGQPKFPMDLSGQNQEKYLIGAQNVKYLAPRWCMFNPNAKDLTNLPDNINYACTFGDCTALGYGSSCNNLDANGNASYAFNMYFQVQNQNPMACNFQGLAKITTDNISTPTCNFIVQIVGSSASSLIPSLVAILFVSLFMILFW 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03462 370 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 4 329 IPR044965 GO:0004553|GO:0005975
Vimu6g03462 370 SUPERFAMILY (Trans)glycosidases 4 235 IPR017853 -
Vimu6g03462 370 SMART X8_cls 257 340 IPR012946 -
Vimu6g03462 370 Gene3D Glycosidases 2 244 - -
Vimu6g03462 370 FunFam Glucan endo-1,3-beta-glucosidase 8 253 349 - -
Vimu6g03462 370 Pfam Glycosyl hydrolases family 17 4 235 IPR000490 GO:0004553|GO:0005975
Vimu6g03462 370 ProSitePatterns Glycosyl hydrolases family 17 signature. 151 164 IPR000490 GO:0004553|GO:0005975
Vimu6g03462 370 Pfam X8 domain 258 326 IPR012946 -
Vimu6g03462 370 Gene3D - 254 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03462 Vimu-Chr6 31384923 31387596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03462 3 346 Miscellaneous Gene Families AT1G64760 77.616 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03462 - - gmx:100815300 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03462 6 31384923 31387596 Vimu6g03462 6 31384923 31387596 ECH
Vimu6g03462 6 31384923 31387596 Vimu8g00021 8 2272906 2276168 PCT