Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03189 ATGGCAGTTGGGTGTGTTAGTGAGTTTATACAATTGAACTTGGCCCTAATGGTGAAGTTGATCGTCTCAAGACACGCAGAAGAAGTATACATGGAGCAACCTTCTGGGTTTTTTGCTCAAGGGGAGTCTTGTAAGCTCTCAGAGTGGCTCGAGTCAAAAAACCAGATTGAGTTTCTTGAAAGAGATTATGCGACTCGCATTGATTTAATTGCCAAAATACGTGGCTTAACTAAGGCAGAGGCATACCTTGAGACTATTCCAGAATCTTGTAGCAGAGAGATAATGTATCGAACTTTATTGTTGAACTGTGTTGGTCAGAACAGTGTGAAGAAAGCAGAAGAAGTTTTCAGTAAACTGAAGAATTTGGACTTGCCTGTTACAGTATTTGCATGCAACCAGATGTTACTTTTGTATAAGAGGAATGACCTGAAGAAAATAGCTGATATGTTATTATTGATGGAAACTGAGAATATCAAGCCTTCTTCTTTTACTTACTCAATCTTAATAGACACAAAAGGCCAGTCCAAAGATATTGATGGAATGGATCTAATTGTTGATAAAATGAAAACAGATGGCATTGAACCAGACATCAAAACACAGGCTGTTTTGGCTAGGCATTACATCTCAGCTGGGCTTCAAGATAAAGCGGAAGCCTTATTGAAGGAGATGGAAGGTGAAAACTTAAAACAGGACAGGTGGCGATGCCAAATTTTACTTCCCCTCTATGCAAACCTTGGAAAGGTGGATGAAGTGGAAAGAATTTGGAAGTTCTGTGAGACAAACCCTCGGTATGATGAGTGTCTAGTGGCAATTGAAGCCTGGGGAAAGTTGAATAAGGTTTATGAAGCAGAGAATGTTTTTGAGACAATGGTAAAGAAATGGAAGCTTTCTTCCAAGAACAGTTCTGTACTACTGAAGGTTTATGCAAATCATAAGATGATTACGAAGGGTAAGGATCTTATTAGGCGAATGGAAGATAGTGGGTGCCGAATAGGCCCACTGACCTGGAATGCTATAGTGAAACTCTATGTCCAAGTCGGGGAAGTGGAGAAGGCAGACTCTGTTCTTCGGAGGGCAGCCCAGCAGAGCCAGATGAAGCCACTGTTTTCCACTTACTTAACTATTTTGCAGCAATATGCTATGAGGGGTGATGTTCATAATTCAGAAAAGATTTTTTATAGAATGAAAGATTATCATTCTAGAGCACTGATGTACCAAGTTTTATTGAATGCCTATATAAAGGCAAAGGCTCCCGCGTATGGGATTAGAGATAGGTTAAGAGCTGATAACATAAAGCCCAATAAAACTTTGGCAAACCAGTTGATTCAAGTTGACGGATTTAGGAAGAATCCACTCTCCGGTTTGCTTGACTGA 1374 0.401 MAVGCVSEFIQLNLALMVKLIVSRHAEEVYMEQPSGFFAQGESCKLSEWLESKNQIEFLERDYATRIDLIAKIRGLTKAEAYLETIPESCSREIMYRTLLLNCVGQNSVKKAEEVFSKLKNLDLPVTVFACNQMLLLYKRNDLKKIADMLLLMETENIKPSSFTYSILIDTKGQSKDIDGMDLIVDKMKTDGIEPDIKTQAVLARHYISAGLQDKAEALLKEMEGENLKQDRWRCQILLPLYANLGKVDEVERIWKFCETNPRYDECLVAIEAWGKLNKVYEAENVFETMVKKWKLSSKNSSVLLKVYANHKMITKGKDLIRRMEDSGCRIGPLTWNAIVKLYVQVGEVEKADSVLRRAAQQSQMKPLFSTYLTILQQYAMRGDVHNSEKIFYRMKDYHSRALMYQVLLNAYIKAKAPAYGIRDRLRADNIKPNKTLANQLIQVDGFRKNPLSGLLD 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03189 457 Gene3D Tetratricopeptide repeat domain 91 266 IPR011990 GO:0005515
Vimu6g03189 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Vimu6g03189 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 367 IPR002885 -
Vimu6g03189 457 NCBIfam pentatricopeptide repeat 163 197 IPR002885 -
Vimu6g03189 457 Pfam PPR repeat 335 358 IPR002885 -
Vimu6g03189 457 Pfam PPR repeat 302 329 IPR002885 -
Vimu6g03189 457 Pfam PPR repeat 370 397 IPR002885 -
Vimu6g03189 457 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 268 451 - -
Vimu6g03189 457 PANTHER OS12G0527900 PROTEIN 43 434 - -
Vimu6g03189 457 Pfam Pentacotripeptide-repeat region of PRORP 95 253 IPR033443 -
Vimu6g03189 457 Gene3D Tetratricopeptide repeat domain 267 453 IPR011990 GO:0005515
Vimu6g03189 457 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 92 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03189 Vimu-Chr6 28350950 28355063 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03189 42 359 EF-hand Containing Proteins AT1G02150 23.565 2.08e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03189 - - gmx:100500196 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03189 6 28350950 28355063 Vimu3g02626 3 40461914 40462324 ECH
Vimu6g03189 6 28350950 28355063 Vimu6g03189 6 28350950 28355063 ECH