Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02626 ATGGCCAAGGGTGAGAAGAAACCGGCTGAGAAGAAGCCTGCAGAGAAGGCTCCGGCGGAGAAAACCAAAGCAGAGAAGAAGATCCCGAAGGATGCTACCTCCGGTGACAAGAAGAAGAAGAAGAAGGCCAAGAGCGTGGAAACCTACAAGATCTATATCTTCAAGGTCCTCAAGCAGGTTCACCCTGACATTGGGATCTCCAGCAAGGCAATGGGGATCATGAACAGCTTCATCAATGATATCTTTGAGAAGCTTGCTCAAGAATCATCCAGACTGGCCCGTTACAACAAGAAGCCCACCATTACATCCCGTGAGATCCAGACTGCTGTTCGTCTTGTCCTCCCTGGTGAGCTTGCCAAGCACGCCGTCTCTGAAGGCACCAAGGCAGTCACCAAATTTACCAGTTCTTAA 411 0.5012 MAKGEKKPAEKKPAEKAPAEKTKAEKKIPKDATSGDKKKKKKAKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02626 136 ProSitePatterns Histone H2B signature. 104 126 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu3g02626 136 Pfam Core histone H2A/H2B/H3/H4 5 112 IPR007125 GO:0003677
Vimu3g02626 136 PANTHER HISTONE H2B 17 135 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu3g02626 136 SUPERFAMILY Histone-fold 23 136 IPR009072 GO:0046982
Vimu3g02626 136 FunFam Histone H2B 5 136 - -
Vimu3g02626 136 Gene3D Histone, subunit A 6 136 IPR009072 GO:0046982
Vimu3g02626 136 MobiDBLite consensus disorder prediction 1 45 - -
Vimu3g02626 136 PRINTS Histone H2B signature 68 88 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu3g02626 136 PRINTS Histone H2B signature 120 133 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu3g02626 136 PRINTS Histone H2B signature 90 107 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu3g02626 136 PRINTS Histone H2B signature 49 67 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu3g02626 136 PRINTS Histone H2B signature 107 120 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vimu3g02626 136 SMART h2b3 39 135 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02626 Vimu-Chr3 40461914 40462324 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02626 K11252 - gmx:100305731 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03189 6 28350950 28355063 Vimu3g02626 3 40461914 40462324 ECH
Vimu3g02626 3 40461914 40462324 Vimu3g02626 3 40461914 40462324 ECH