Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03146 ATGGATCATATTAGTAATGAGGCTAGAGTAGACCGTTTTCCAATTGGTCCTTCAGACATTCTTGGTAGAACAATTGCTTTCAGGGTTCTATTTTGTAGGTCCATGTCACAGTTTCACCACCAGATATTTCATGTGTTGTTAGATCTCTTCTATAGGTTTAGGGGGGGTTTGTTATCCTTTATATCATGGTTGCATCCCAGAAATCCTCAGGGGATACTGGCAATGATGACAATTATTGCTTTCTTGTTGAAACGATATACAAATGTGAAAGTAAGGGCTGAAATGGCATATAGGAGGAAGTTTTGGAGAAACATGATGAGATCTGCTTTGACCTATGAGGAGTGGGCTCATGCAGCTAAGATGCTCGATAGAGAGACAACAAAGATGAATGAATCAGACCTTTATGATGTGGAATTGGTGAGGAACAAGCTTCAAGAGCTCCGCCACCGTCGGCAAGAGCGATCTCTTAGAGATATAATATTTTGTATGCGTGCCGATCTTGTTAGAAATTTAGGTAATATGTGTAATCCTGAACTACACAAGGGTAGGCTTCAGGTGCCCAGATTAATCAAGGAATACATTGATGAAGTAACGACTCAATTGAAAATGGTCTGTGATTCTGATTCAGAGGAGCTATCATTGGAAGAAAAACTGGCTTTCATGCATGAAACTAGGCATGCATTTGGGAGGACTGCTTTGCTGTTAAGTGGGGGTGCTTCTCTTGGAGCTTCTCATGTGGGTGTAGTTAAAACACTGGTAGAACATAAACTCTTGCCTAGGATAATTGCTGGTTCAAGTGTGGGATCCATTATGTGTGCCGTTGTTGCCACGAGGACTTGGCCTGAGCTTCAGAGCTTTTTTGAAGATTCATGGCACTCACTGCAATTTTTTGATCAAATGGGTGGGATTTTTACAGTTGTTAAGAGAGTCGCGACATTTGGTGCTGTTCATGAGATCAGACAGTTGCAAATAATGTTGAGGCATCTAACAAGCAACCTTACATTTCAAGAAGCTTATGACATGACTGGTAGAATTCTCGGGATTACAGTTTGTTCCCCAAGGAAGCACGAACCACCTAGATGTCTTAACTACTTGACTTCACCCCATGTGGTTATATGGAGTGCAGTCACTGCTTCTTGTGCCTTTCCTGGCCTTTTTGAGGCTCAAGAATTGATGGCAAAGGATAGAAGTGGGGAAATTATTCCTTATCATCCTCCTTTTAACTTAGGTCCTGAAGAGGGCTCCACACCAGCGCGCCGTTGGAGGGATGGTAGCTTGGAGATTGATTTACCTATGATGCAGTTGAAAGAACTATTCAATGTCAATCATTTTATAGTTAGCCAGGCCAACCCTCATATTGCACCATTATTGAGATTGAAAGCATTTGTGCGGACTCACGGAGGCAACTTTGCTGCCAAGCTTGCGCATCTTGTGGAGATGGAGGTGAAACATAGGTGTAATCAAATACTGGAACTTGGTTTTCCATTAGGTGGACTTGCCAAGTTGTTTGCTCAAGACTGGGAAGGTGATGTGACTGTTGTTATGCCTGCAACTCTTGCTCAGTACACCAAAATTATACAGAACCCTTCTTATGGAGAGCTTCAAAAGGCAGCCAACCAAGGGAGAAGATGTACCTGGGAGAAACTTTCAGCCATTAAAGCAAATTGTGGCATTGAGCTTGCACTTGATGAGTGTGTTGTGATTCTCAATCATATGAGAAGACTAAAGAGAATTGCTGAGAGAGCTGCTACTGCTTCTCATGCTGCTACTGCCTCTCATGGTTTGTCCAGTACTGTCAGGTTCAGTGCTTCAAGAAGAATCCCTTCATGGAATTGCATTGCACGAGAGAATTCAACGGGCTCCCTTGAGGACCTTATAGATGTTTCTTCCTCATTGCATCAAAGCATCAGCAGTTCTAATGTGGCCAGTGGTAAAACTTGGAAGACCCACCGTGGCATACACGAGGGAAGTGACAGTGACTCCGAAAGTGTTGATTTGAACTCTTGGACAAGATCTGGTGGACCTTTGATGAGAACTACTTCGGCAAATATGTTCATTGATTTTATGCAAAACTTAGAAGTTGACACTGAACAAAATAAAGCCTTAATGAGTCATGCTAACCCTAATGATTTTCAGTATCGTAGCCCCAGGCTCACAACTCTGGATAGGAACTCCGATAGCACAGAATCTGAGCTAAGGGAAATCAGCAACAGGGTGGTGAATGGCTCCCGCATACTGTTGACTGCGGGTGATTTTTTGCAGCCTGAAAGGATCCATAATGGTATTGTGTTTAATGTTGTCAAGAAAGAAGACGTGACACCCTTAAACAGGAGTAATGATTTTGAAAATTACAACAATGAAGTTACTGAATGTGTTCAAGATGAGTGTCCAGGGAAGGAGATGGATGCTGCTAGCTCATCTTCTGAACATGGAGATGATGAATCCACAGCAGCTACGTCCTTAACTCCATCTCCAGATTATACCTGTGTTAACCATTCGGGCACAGATTCAAGTATGGATCAGAGTATCGTTGATGGCTAG 2541 0.427 MDHISNEARVDRFPIGPSDILGRTIAFRVLFCRSMSQFHHQIFHVLLDLFYRFRGGLLSFISWLHPRNPQGILAMMTIIAFLLKRYTNVKVRAEMAYRRKFWRNMMRSALTYEEWAHAAKMLDRETTKMNESDLYDVELVRNKLQELRHRRQERSLRDIIFCMRADLVRNLGNMCNPELHKGRLQVPRLIKEYIDEVTTQLKMVCDSDSEELSLEEKLAFMHETRHAFGRTALLLSGGASLGASHVGVVKTLVEHKLLPRIIAGSSVGSIMCAVVATRTWPELQSFFEDSWHSLQFFDQMGGIFTVVKRVATFGAVHEIRQLQIMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIIPYHPPFNLGPEEGSTPARRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHIAPLLRLKAFVRTHGGNFAAKLAHLVEMEVKHRCNQILELGFPLGGLAKLFAQDWEGDVTVVMPATLAQYTKIIQNPSYGELQKAANQGRRCTWEKLSAIKANCGIELALDECVVILNHMRRLKRIAERAATASHAATASHGLSSTVRFSASRRIPSWNCIARENSTGSLEDLIDVSSSLHQSISSSNVASGKTWKTHRGIHEGSDSDSESVDLNSWTRSGGPLMRTTSANMFIDFMQNLEVDTEQNKALMSHANPNDFQYRSPRLTTLDRNSDSTESELREISNRVVNGSRILLTAGDFLQPERIHNGIVFNVVKKEDVTPLNRSNDFENYNNEVTECVQDECPGKEMDAASSSSEHGDDESTAATSLTPSPDYTCVNHSGTDSSMDQSIVDG 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03146 846 Gene3D Cytosolic phospholipase A2 catalytic domain 312 494 - -
Vimu6g03146 846 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 233 436 IPR002641 GO:0006629
Vimu6g03146 846 Gene3D Cytosolic phospholipase A2 catalytic domain 221 311 - -
Vimu6g03146 846 MobiDBLite consensus disorder prediction 707 729 - -
Vimu6g03146 846 CDD Pat_SDP1-like 163 570 - -
Vimu6g03146 846 MobiDBLite consensus disorder prediction 810 846 - -
Vimu6g03146 846 MobiDBLite consensus disorder prediction 647 666 - -
Vimu6g03146 846 Pfam Domain of unknown function (DUF3336) 95 226 IPR021771 GO:0004806|GO:0006629
Vimu6g03146 846 PANTHER NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER 58 571 - -
Vimu6g03146 846 MobiDBLite consensus disorder prediction 795 846 - -
Vimu6g03146 846 MobiDBLite consensus disorder prediction 707 723 - -
Vimu6g03146 846 SUPERFAMILY FabD/lysophospholipase-like 229 575 IPR016035 -
Vimu6g03146 846 Coils Coil 718 738 - -
Vimu6g03146 846 Pfam Patatin-like phospholipase 233 424 IPR002641 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03146 Vimu-Chr6 27759027 27763272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03146 4 807 Acyl Lipid Metabolism Gene Families AT5G04040 73.736 0.0 1211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03146 K14674 - gmx:100791261 1496.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03146 6 27759027 27763272 Vimu6g03146 6 27759027 27763272 ECH
Vimu6g03146 6 27759027 27763272 Vimu3g00497 3 4788098 4791050 PCT