Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00497 ATGGATCATATAAGTAACGAGGCTAGGGTTGACCCTTTCGCGATTGGCCCTTCTAGCATTCTTGGCAGGACTATTGCTTTCAGGGTTCTCTTCTGCAAGTCTATGTTAAAATTGAGGTATCAGATACATTTTGTGTTGTTGGATATCTTCTACGGTTTTAGGAGATTTTGGGGACCCGTTGTGTCATGGTTGCACCCAAGAAATCCACAGGGGATATTGGCAATGATGACAATAGTTGCTTTCTTGTTGAAACGGTACGCCAAAGTGAAGGTGAGAGCTGAAATGGTATATAGGCGGAAATTTTGGAGAAATATGATGAGATCTGCATTGACCTATGAGGAATGGGCTCATGCAGCCAAAATGCTTGATAGAGAGACACCAAAGATGAATGAATCAGACCTTTATGATGTGGAGCTGGTGAGTAACAAGCTTGAAGAGCTGCGCCATCGCAGGCAAGAGGGGTCTCTTAGGGATATAATATTTTGTATGCGTGCAGATCTTGTTAGAAATCTTGGTAATATGTGTAACCCTGAAGTCCACAAAGGTAGGCTTCAGATGCCAAGACTTATCAAGGAGTATATTGATGAGGTAACAACTCAGTTGAGAATGGTGTGCAACTCTGATTCGGAGGAGCTTGCATTAGAAGAAAAGCTTTCTTTCATGCATGAAACTAGACATGCATTTGGGAGGACTGCTTTGTTGCTAAGTGGGGGTGCTTCCCTTGGAGCTTTTCATGTTGGAGTGGTTAAAACACTGGTAGAACACAAACTTATGCCGAGGATAATTGCTGGTTCAAGTGTAGGATCCATTGTGTGCTCCATTGTTGCCACAAGGTCTTGGCCCGAGCTTCAAAGTTTTTTCGAGGATTCACTGCAGTCATTACAGTTTTTTGACCAATTAGGTGGAATTTTTACAGTTGTGAAGAGGGTTGCAACATATGGTGCAGTTCATGAGATCAGACAATTGCAAGTGATGCTGAGGAATCTAACAAGCAATCTTACATTTCAAGAAGCATATGATATGACGGGTCGAATTCTTGGGATTACAGTTTGTTCTCCAAGAAAGCATGAACCACCTAGATGTCTTAATTACTTGACTTCACCTCACGTTGTTATATGGAGTGCAGTCACTGCTTCTTGTGCCTTTCCTGGCCTTTTCGAGGCTCAGGAATTGATGGCAAAGGATAGAAGTGGAGAGATTGTTCCTTACCATCCTCCATTTAATTTGGGTCCTGAAAAGGGTTCTACTCCAGTGCGCCGTTGGAGGGATGGTAGCTTGGAGATTGATTTACCTATGATGCAGTTGAAAGAGCTGTTCAACGTCAACCATTTTATAGTTAGTCAGGCCAATCCCCATATTGCACCATTATTGAGATTGAAAGAGTTTATACGAGCTTATGGAGGTAATTTTGCAGCAAAGCTTGCTCATCTAGTAGAGATGGAGGTGAAACATAGATGTAATCAAGTACTGGAACTTGGCTTTCCATTGGGTGGGCTTGCCAAACTCTTTGCTCAAGACTGGGAGGGTGATGTAACAGTTGTTATGCCTGCAACTCTTTCTCAGTACTTAAAGATCATACAGAACCCTTCTTATGTGGAACTTCAGAAGGCAACCAACCAAGGGAGAAGAGGCACTTGGGAGAAGCTTTCTGCCATAAAAGCAAACTGTGGAATTGAGCTTGCTCTTGATGAGTCTGTGGCAATTCTCAATCATACAAGACGTCTGAAAAGAAGCGCTGAGAGAGCTGCTGCTGCCTCTCATGGTCTCCCCACCATAGTCAAATTCAGTGGTTCAAGAAGAATTCCCTCATGGAATGTCCTTGCTCGAGAGAATTCTACAGGGTCCCTAGAAGACCTTCATGCAGATGCTGCTTCCTCATTGCATCAAGGTCTTATCAGTCCCAGAGGAGCCACTGGTAAAAACTTGAAGTCCCATCGTAGCAATCATGAGGCAAGTGACAGTGAATCTGAAAGTGCTGACTTGAATTCTTGGACCAGATCCGGTGGGCCTTTGATGAGAACTACATCATCTGATATGTTCATTGATTTTTTCCAAAACTTAGAAGTTGACACTGACCTTGACAGAAGCAAGGTGACTCAGATCAGCCCTCGTGATTTTCAGCATCACAGTTCAAGGCACACAACTCCTGATAAGTGCTCCGAGAGCACAGAATATGATCAGAAAGAAAATGGCAACAGGGTTGTCATGAATGGATCCAACATATTGGTAACTGAAGGTGATCTTCTGCAGCCTGGAACAATCCATAATGGGATTGTGTTCAATGTTGTCAAGAAAGAAGGCTTGACACCTTCAAACTGGAATCAGGATAATAACAGTTGTAACAGTGAAGTTGTTGAATGTGTACAGATTGACTTTCCAGGGAAGGAAATGGATGCTTCTAGTTCAGCTTCTGAAAATGGTGATGAGGAATCCACAATGTCCAGGTCTTTAACTGAAAAACTAGATTATAATTCTACAGATATGGATCAGAGTATTGCTGACAGTTAA 2508 0.427 MDHISNEARVDPFAIGPSSILGRTIAFRVLFCKSMLKLRYQIHFVLLDIFYGFRRFWGPVVSWLHPRNPQGILAMMTIVAFLLKRYAKVKVRAEMVYRRKFWRNMMRSALTYEEWAHAAKMLDRETPKMNESDLYDVELVSNKLEELRHRRQEGSLRDIIFCMRADLVRNLGNMCNPEVHKGRLQMPRLIKEYIDEVTTQLRMVCNSDSEELALEEKLSFMHETRHAFGRTALLLSGGASLGAFHVGVVKTLVEHKLMPRIIAGSSVGSIVCSIVATRSWPELQSFFEDSLQSLQFFDQLGGIFTVVKRVATYGAVHEIRQLQVMLRNLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFNLGPEKGSTPVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHIAPLLRLKEFIRAYGGNFAAKLAHLVEMEVKHRCNQVLELGFPLGGLAKLFAQDWEGDVTVVMPATLSQYLKIIQNPSYVELQKATNQGRRGTWEKLSAIKANCGIELALDESVAILNHTRRLKRSAERAAAASHGLPTIVKFSGSRRIPSWNVLARENSTGSLEDLHADAASSLHQGLISPRGATGKNLKSHRSNHEASDSESESADLNSWTRSGGPLMRTTSSDMFIDFFQNLEVDTDLDRSKVTQISPRDFQHHSSRHTTPDKCSESTEYDQKENGNRVVMNGSNILVTEGDLLQPGTIHNGIVFNVVKKEGLTPSNWNQDNNSCNSEVVECVQIDFPGKEMDASSSASENGDEESTMSRSLTEKLDYNSTDMDQSIADS 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00497 835 Gene3D Cytosolic phospholipase A2 catalytic domain 308 492 - -
Vimu3g00497 835 PANTHER NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER 53 571 - -
Vimu3g00497 835 MobiDBLite consensus disorder prediction 793 835 - -
Vimu3g00497 835 MobiDBLite consensus disorder prediction 630 667 - -
Vimu3g00497 835 Pfam Domain of unknown function (DUF3336) 97 226 IPR021771 GO:0004806|GO:0006629
Vimu3g00497 835 Gene3D Cytosolic phospholipase A2 catalytic domain 221 307 - -
Vimu3g00497 835 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 233 436 IPR002641 GO:0006629
Vimu3g00497 835 MobiDBLite consensus disorder prediction 799 835 - -
Vimu3g00497 835 Pfam Patatin-like phospholipase 233 424 IPR002641 GO:0006629
Vimu3g00497 835 CDD Pat_SDP1-like 163 570 - -
Vimu3g00497 835 SUPERFAMILY FabD/lysophospholipase-like 229 572 IPR016035 -
Vimu3g00497 835 MobiDBLite consensus disorder prediction 706 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00497 Vimu-Chr3 4788098 4791050 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00497 4 801 Acyl Lipid Metabolism Gene Families AT5G04040 74.410 0.0 1221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00497 K14674 - gmx:100807526 1442.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00497 3 4788098 4791050 Vimu3g00497 3 4788098 4791050 ECH
Vimu6g03146 6 27759027 27763272 Vimu3g00497 3 4788098 4791050 PCT